| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0055 |
|---|
| Symbol | |
|---|
| ID | 4081549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 58843 |
|---|
| End bp | 62181 |
|---|
| Gene Length | 3339 bp |
|---|
| Protein Length | 1112 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638008416 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_615114 |
|---|
| Protein GI | 103485553 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGGCGT TCGACCTTGC TCGGCTTCAT GCACGCGCGC TTCGCGAAGC CAAGATCGCC
GGGCGTGCGA CCGGACCCGC TGCCGTCAAA TCGGCCGCCG CCGCCGAAGG ATTTGTCATC
AAGCCGGTTC CTCCCGGCGA TCCGGTGATC GGGACCAGCG ATGCCAAACT GCTTCGCGAG
TGGTGCTCCA TTTATGTTCG CAACGATGTT TCGGATGCCG AGGCAGCCGC TTTTGTCGCT
CACGAGCTTG GGCATCTGAA ACTGCACCGT CCTCAAGACA ATTGTACGGG CCCGAATCCG
GACGCTGGTA CCTCGCGTGC TTTATCGCGG GTCGAAGCCT ATGGACCGCG CGAAAGGCGT
GAACTCCAGG CCAATGTCTT CGCGCGCGAG TTGCTGCTGC CGCGTGCGCT CGCGCGGCAG
CTTTTCTTGG TTGAGCGGCT AGGCGCAGGC AGCATCGCGC AGCTGCTCGA ACTGCCCGTT
CCGCTCGTGC GCCGTCAGTT GTTCGACAGC CTGCTGGGAC CCGATGCCTC GGCTCCTACC
GTCAATGCGC AAAAGCCGAA GTTTGGGCGC GATGACAGCC AGGAGGCCGC CGCGGGATTC
GCGGATCCGG CGCTGCTACT CGAAGCCGGC CCGGGCTCGG GCAAGACGCG GACACTCGTA
AAGCGGATCG AGCACCTGCT CGACTTCGAC GAGGCCGTGC CGAATGAAAT TCTTGCGCTG
ACCTTCTCGA ATAAGGCGGC CGGTGAACTC GCGGACCGTA TTGCCACCGC CCGGCCTGAC
GCTGCCGCCG ATATGTGGAT CGGCACGTTC CATGCCTTCG GATTGGATCT CATCCGCCGC
TATTACGAAT TGCTGGACCT GCCCAGCAAC GTTCAGCTCA TCGACAAGGC ACAGGCGATC
GAACTGCTTG AGGACCAGCT GCCCTTGATG GGGCTCAACC ATTATCATGA TCTGCGCAAT
CCGGATCAGG GCCTCGTGAA GATCCTCTCG GCCATCTCGC GCGCGAAAGA CGAACTTGTC
ACGCACGCCG AGTTTACACG GCGTGCCCGG GAAGCGCTGG CGGCAGCCGT GAGCGCAGAG
CAGGTCGAGG TGGCCGAACG AGCGTGCGAG GCCGCACGAG TCTACGAAAT TTATGCCGAT
GCGTTGGGGA AGGCCGGCGC TGTCGATTTC GGCGACCTCG TCATGTTGCC GACGCTCCTC
ATGATGCGCA ATGATTGCGT GCGTGCTCAG GTGGCTCAAC GCCATTCAAT GGTGCTGGTT
GACGAGTATC AGGACGTCAA TCGCGCTAGC GCGCGGCTGT TGATGGAATT GTATCGGGAA
GGTGCACGTC TTTGGGTCGT CGGCGACGCC CGGCAATCGC TCTACCGCTG GCGCGGCGCG
TCATCGGCGA ACATGGCCCA GTTCGAGCGC GATTTTTCCG GAGGCAAACG GCTCCCTCTC
GACCGCAATT ATCGCTCGAC CGAGCATATT GTCGGGCTTG GCCGAGGCTT CGCCAGAGAC
ATGCGCGCCG GGAAAAACGG GCTCGCCTAT AATGCTAAAT CCGCGCGGGA GGAGCCTGGG
AGCGCAACCC GCTTGCTCGT CGGACTCGAT GACCGGTGCG AAGGAGAGTT GCTGGCGGCC
GAAATCACTT CCCTCAAGCA GGCCGGCGTC CCCTTGTCGC AGCAAGCCGT TCTCGCCCCG
ACCAACAACC GCCTTGATAT TGTAGCCGGT ATCCTTGCCG AACACGGGAT TGCGACTACG
CATCTCGGCA GCTTCTTCGA GCGCGAGGAA GTGCGGGACC TGCTCTCAGT CATTGCTCTG
CTGGCCGAAG CGAATGGCGG CGCGCTCGTT CGCGTGGCGG CCCTTCGCGA GATCGGGGTC
GGCGCCAGTG ACATCGGTGT TATCGTGCGA GCCGCGCAGG CGGCCCGGGT GCCGCTGCTT
TCCTTGCTCG CGACCGCATC GACCCTGACA GGCATGAGCC CGACAGGTGG CGAAGCGCTC
GAACAGCTGG GCCTGCAAAT GGCGGGGCTC GACCAGTTCA CCCCGGCGTT CGAAGTGGCG
GCGAGCTGGT TGCTCGATCG ATCCGACTAT CTGCGCGACC TAGCAGTTGC TCCCGACGCC
TCCGGATCGC TGTCCCGCGC AGCTCTATTG GCATTGCTCG GGTTTCTCGA TCAGCGCGAG
CTGGGTGGCC AGCCGCTGAC ACCGGCCCGA GCGCTCAAGC GCATGCGAAG CACGGTATTG
CTGGCGGATG ATCGAGACTT GCGGGATGCA ACGCTCGGCG CCGATGCGGA CGCCGTCCGC
CTAATGACCA TACACGGCGC GAAGGGGCTG GAGTTTCCGG CCGTCCATGT GGTTGGCCTA
CACGATCAGT GCCTGCCGGG CGCGTTCCGG CGCGACGACA GCCCGCTTCC GCCGGGGCTT
GTAGAACCCG AAACGCGCGA GGGTCATCTC GAGGAGGAGG AATGCCTGTT CTTCGTCGCC
ATATCCCGGG CCGAAGACCA TCTGCGCCTC TATCACAGCG AGCTGGCGAA CGTGCGGGGT
CGCAAACCTT CGCCGTTTCT GGGACGGCTC GGAGCGCTGG AACGCCGCCA TTTGCCAGCC
GCAGCGACAG CCGCCGGAGC GGCAGGTTCC CCGCTCTCGC CGATCTCGAC CGACCGGATC
AACCTGTTCG ATGTTCGGGA CTTTGACAGC TGCCCGCTTC GCATCGCCTA TCGCCGCTTT
TTTGGCGTTG AGGGCCGCCG GCACGAAACG CCCTATCTGA AGACCTCGGG GGTGCTTTAT
GCGCTCGTCG ATCGAATAAC CGAAGTGTCG GGGCCGGGAG TGGAGGAAAG GCTCCAGGTG
CTGCTTGGCG AAATCTGGGC CATTCGCGGT CCAGCCGAGC ACGGACTGGC TGCCGACTAT
CTTGCGCATG CGGCTGGGCG GGCGGCGGCG CTGGGGCGCC TGATGAGCGG CTTCGACTCG
CCGGGCTATT CGCAGATCGA GTTGCCCATA AACGGCGGCC TGCTGACCGT CGCCGCGCCC
CTGGTCCGAT CCACGGCGGC CGGCACAGAG ATACGTTTTC TCGAAGCGGG CCGCGTTCGT
TCGAAGACCG GCAACGATCT GACGGCGGGA CTATTGCTGG CGGCGGCGCG TCATACATTC
GGCCCGAACG TCTCCGTCAC GATCGGGCAT GTCACCGACG GTGCAACAGT TCCAGTCAAG
CGGCAGGACG ACAAGGCCGC CGGTGACGTC GAAGCGGCGG CGGCTATCCT AGCTGCGATC
AACAAAGGCG CTCTCCCGGC GAAACCGGCA ATGCGCGTCT GCGGACGTTG CCCCCATTTC
GTCGCCTGCC CGGCGGTCGG CCGGGCCGAG ACCGCCTGA
|
|---|
| Protein sequence | MAAFDLARLH ARALREAKIA GRATGPAAVK SAAAAEGFVI KPVPPGDPVI GTSDAKLLRE
WCSIYVRNDV SDAEAAAFVA HELGHLKLHR PQDNCTGPNP DAGTSRALSR VEAYGPRERR
ELQANVFARE LLLPRALARQ LFLVERLGAG SIAQLLELPV PLVRRQLFDS LLGPDASAPT
VNAQKPKFGR DDSQEAAAGF ADPALLLEAG PGSGKTRTLV KRIEHLLDFD EAVPNEILAL
TFSNKAAGEL ADRIATARPD AAADMWIGTF HAFGLDLIRR YYELLDLPSN VQLIDKAQAI
ELLEDQLPLM GLNHYHDLRN PDQGLVKILS AISRAKDELV THAEFTRRAR EALAAAVSAE
QVEVAERACE AARVYEIYAD ALGKAGAVDF GDLVMLPTLL MMRNDCVRAQ VAQRHSMVLV
DEYQDVNRAS ARLLMELYRE GARLWVVGDA RQSLYRWRGA SSANMAQFER DFSGGKRLPL
DRNYRSTEHI VGLGRGFARD MRAGKNGLAY NAKSAREEPG SATRLLVGLD DRCEGELLAA
EITSLKQAGV PLSQQAVLAP TNNRLDIVAG ILAEHGIATT HLGSFFEREE VRDLLSVIAL
LAEANGGALV RVAALREIGV GASDIGVIVR AAQAARVPLL SLLATASTLT GMSPTGGEAL
EQLGLQMAGL DQFTPAFEVA ASWLLDRSDY LRDLAVAPDA SGSLSRAALL ALLGFLDQRE
LGGQPLTPAR ALKRMRSTVL LADDRDLRDA TLGADADAVR LMTIHGAKGL EFPAVHVVGL
HDQCLPGAFR RDDSPLPPGL VEPETREGHL EEEECLFFVA ISRAEDHLRL YHSELANVRG
RKPSPFLGRL GALERRHLPA AATAAGAAGS PLSPISTDRI NLFDVRDFDS CPLRIAYRRF
FGVEGRRHET PYLKTSGVLY ALVDRITEVS GPGVEERLQV LLGEIWAIRG PAEHGLAADY
LAHAAGRAAA LGRLMSGFDS PGYSQIELPI NGGLLTVAAP LVRSTAAGTE IRFLEAGRVR
SKTGNDLTAG LLLAAARHTF GPNVSVTIGH VTDGATVPVK RQDDKAAGDV EAAAAILAAI
NKGALPAKPA MRVCGRCPHF VACPAVGRAE TA
|
|---|
| |