Gene Sala_0041 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0041 
Symbol 
ID4082228 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp40793 
End bp41344 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content63% 
IMG OID638008401 
ProductTspO and MBR like proteins 
Protein accessionYP_615100 
Protein GI103485539 
COG category[T] Signal transduction mechanisms 
COG ID[COG3476] Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.195212 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.762036 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAAA TCGCAACGCC GGGCCAGCTT CGCATGTCCT ACCTCCGCTG GGCGCTCGTC 
ACCGTTCCCG CCATCGTCCT CATCGGCAGC CTGATGGGCA TCCTTTCGAA CAGCGGTTAT
GACAATCGCT GGTTCGCCGC GCTCGACCTG CCGGCGATCA CCCCGCCGGG CTGGGTGTTC
GGCATCGTCT GGCCGATCCT GTACATCATG CTCGGCCTGT CGCTCGCGAT GATTCTCCAC
GCGCGCGGTG CAAAGGGGCG CGGCTTTGCG CTGCTGCTCT TCTTCGTCCA GCTGATCGCC
AATTTCGCAT GGTCGCCGCT CTTTTTCGGC CAGCATCAGG TGACGAACGC GCTCTATCTC
ATCATCTTCA TCCTGATGGT GTCGATTGCC ACCGCCTTTG CCTTTGCGCC GATCCGCAAG
GCCGCGGCGT GGCTGCTGGT GCCGTATATG GCGTGGCTGA GCTTTGCCGC GATCCTCAAT
TTCCAGATCG ACCAGCGCAA TCCCGGCGCC GAAACCCTTG TCCCCGCCGC CGCGACCACC
CAGATAGGCT AA
 
Protein sequence
MTEIATPGQL RMSYLRWALV TVPAIVLIGS LMGILSNSGY DNRWFAALDL PAITPPGWVF 
GIVWPILYIM LGLSLAMILH ARGAKGRGFA LLLFFVQLIA NFAWSPLFFG QHQVTNALYL
IIFILMVSIA TAFAFAPIRK AAAWLLVPYM AWLSFAAILN FQIDQRNPGA ETLVPAAATT
QIG