| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0030 |
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| Symbol | |
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| ID | 4082217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 28222 |
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| End bp | 30534 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638008390 |
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| Product | patatin |
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| Protein accession | YP_615089 |
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| Protein GI | 103485528 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03607] patatin-related protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.491773 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0729626 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGAAA AGGAACTGCG CTTCGCCCTC ATCTGCTATG GCGGCATCAG TCTTGCCGTC
TACATGCACG GCGTCACCAA GGAAGTGTGG CGGCTCGCCG CCGCGTCGCG GGCCTTTCAC
GACGGCGGGG CGATCGGCGG CACGGGTGCG GTCTATCGCG ACCTGCTTGG TGCGATTGCG
GCGCACGGCA ATGTGCGGCT GCGCGTCTTT ACCGACATCG TCGCGGGCGC GAGCGCGGGG
GGGATCAACG GCATCTTCCT CGCGCGTGCG CTGGCGACCG GCGAATCGCT CGATCCGCTC
ACCGACCTCT GGCTCGACAG CGCCGACGTC GACAATCTGC TCGACCCCGA CGCACGGCCG
CTGTCGAGAA TGACAAAGTT CTGGGCGGTG CCGATCGCCG GCTGGGCGAT GAAACGGCGC
GGCAACAGCA TCGACCGGAC GGTGGGCGAA GCGGCGCAGG ACGAGGTGCG CGCCAAGCTT
TCGCGCTTCG TGCGCGCGCG CTGGTTCGAA CCCCCCTTTG GCGGCGAGAC CTTCTCGCAC
CTGCTGTTCG ACGCCTTTGC CGCGATGGAC GCGGCGCCGC GCGGGCCGGT GCTGGTGCCG
GATGGCCAGC CGGTCGACCT GTTCGTGTCG GTCACCGATT TTGCCGGGCA CAGCGTCCCG
CTTGCGCTCA ACAGCCCGCC GCGCGTGACC GAGAACGAGC ATCGGCTGAT CCTGCATTTT
CGCGAGGACG GCCGGACGGG CAAGCGGCTC GACGATGTGC CGGGGCTCGC GGCGGCGGCG
CGTGCGACGG CCAGCTTTCC CGGTGCCTTC CCGCCCTTCA CGCTGCGCGA AATCGACCGC
GTGCTCGAAA AGCGCGGATT GGATTGGCCC GGCCGCGACG CCTTCGTCCG CGCGCAATTG
CCGCGGGGCG AGGCGGGCGA TGCGGCCGAC CGCGTGCTCA TCGACGGCTC GGTGCTCGCC
AACGCGCCCT TTCGCCCCGC GATCGCGGCG CTCAAGCAGC GCCCCGCGCG GCGTGAGATC
GACCGCCGCT TCGTCTATAT CGACCCCAAG CCCGACTTTC GTTCGATCAG CTTCGGCAGG
CCCGGCGACG CTGCCGACAG CGACGACCCG CGGTTGCCGG GTTTTGTGCC GACCATCCTC
GGCGCATTGT CCGAAATCCC GCGCGAACAG CCGATCCGCG ACAATGTCGA GGTGATCGAG
GGCATGTCGC GGCGCATCCG GCGGATGCAG CATATCGTCG ATGCGATGAA GGTCGAGGTC
GAGGAACAGG TCGCGGCGCT GTTCGGCACG ACCTTTTTCC TCGACACGCC GACGCTTGCG
CGGCTCCGGA AATGGCGCGC GAAGGCGCAG GAACAGGCCG CGGCGCGCGC GGGTTTTGCC
TTTGCGCCCT ATGGTCACCT CAAATTGTCG GCGGTGGTCG AGGAACTGGC GCGGCTGATC
GACCGGCTGC TCCCTGCCGA GGGCGCAATT CATCGCGCGA ACCGGCGCCT TGCGCTGTGG
GACGAGGTGC GCGCACGCGG GCTCGACCGG ATTTCAGGGA AGAAGGGGGC GGGGGCGAGC
GGCGATGCGA TCGCTTTTTT CCGTACCCAC GACCTTGGCT TTCGTATCCG CCGTCTGCGT
TTCCTCGGTC GCGAGCTCGA CACCGCGGTC GAGGCGAAGC GCGACGCGCG CGACCCCGCG
TGCGACGCAA TGCGCGACGC GATCTTCGCG GCGCTCGGCC TCTATCTCGA CCGGCAGGGC
GACGCCTGGC TGGCCGACCT CGACCTCCCC GCCGACGCCG GGCCGGGCGA CTGGATCGAC
GCGATCGCGG CACGCCGCGA CCTCGCCATC GTCGACAGCG AGGCCGACGC GCTGATCGCC
GCCGGGCTCG CCGCGATGCC GAAGGACGAC CGCCGCGTGC TGCTGCTCGC CTATCTGGGC
TATCCCTTTT ACGACATCGC GACCCTGCCG CTGCTCCAGG GCGAGGGGTT CGACGAATAT
GACCCGATCA AGATCGACCG CATCTCGCCG TCCGACGCGA CTGCGATCCG CAGCGGCGGC
GCGGCGGCAA TGTTGAAAGG GATCGAGTTC AACAGTTTCG GCGCCTTCTT CAGCCGCGCC
TACCGCGAGA ATGACTATCT ATGGGGCCGC CTCCACGGCG CCGACCGGCT GATCGACATC
GTGGCGTCGA GCGTGACCGG CGAGGGCGCG CTGCCCGCTG CGGAGCTTGC GGCGATGAAA
CGTCGCGCGT TTCACGCGAT CCTCGATCAA GAGGAAAAGC GGTTGCCGAA GGTTGCGGCG
TTGATCGCGC AATTGCGGCA AGAGATTGGC TAG
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| Protein sequence | MREKELRFAL ICYGGISLAV YMHGVTKEVW RLAAASRAFH DGGAIGGTGA VYRDLLGAIA
AHGNVRLRVF TDIVAGASAG GINGIFLARA LATGESLDPL TDLWLDSADV DNLLDPDARP
LSRMTKFWAV PIAGWAMKRR GNSIDRTVGE AAQDEVRAKL SRFVRARWFE PPFGGETFSH
LLFDAFAAMD AAPRGPVLVP DGQPVDLFVS VTDFAGHSVP LALNSPPRVT ENEHRLILHF
REDGRTGKRL DDVPGLAAAA RATASFPGAF PPFTLREIDR VLEKRGLDWP GRDAFVRAQL
PRGEAGDAAD RVLIDGSVLA NAPFRPAIAA LKQRPARREI DRRFVYIDPK PDFRSISFGR
PGDAADSDDP RLPGFVPTIL GALSEIPREQ PIRDNVEVIE GMSRRIRRMQ HIVDAMKVEV
EEQVAALFGT TFFLDTPTLA RLRKWRAKAQ EQAAARAGFA FAPYGHLKLS AVVEELARLI
DRLLPAEGAI HRANRRLALW DEVRARGLDR ISGKKGAGAS GDAIAFFRTH DLGFRIRRLR
FLGRELDTAV EAKRDARDPA CDAMRDAIFA ALGLYLDRQG DAWLADLDLP ADAGPGDWID
AIAARRDLAI VDSEADALIA AGLAAMPKDD RRVLLLAYLG YPFYDIATLP LLQGEGFDEY
DPIKIDRISP SDATAIRSGG AAAMLKGIEF NSFGAFFSRA YRENDYLWGR LHGADRLIDI
VASSVTGEGA LPAAELAAMK RRAFHAILDQ EEKRLPKVAA LIAQLRQEIG
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