Gene Sala_0025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0025 
Symbol 
ID4082212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp19249 
End bp20457 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content67% 
IMG OID638008385 
Productpeptidase M23B 
Protein accessionYP_615084 
Protein GI103485523 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0739] Membrane proteins related to metalloendopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.025775 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCGTCGA AACCAACGGG CCTGCGCGAT GTGCGCCAGC GCTTTAACGC GCTGTTTCAG 
GACCATGAAA TCTTCGTTCG CACGCACGGC CACGTCCGTT TCTTGCGTGT CAGCGCCCTC
TGGCAGAAAC GCGTCGCGCT GATCGCCGGG CTGGTGCTGC TCGCCTGGGC GGGCGCAACG
CTTGCCGTGC TCGTCAACCA GCTGCTCACC GCCGACGAAC GCGCGGCGGT TGCGGCGCAG
AAAGCCGCCG CCGCCGCGTC CGAGGCGCGC ATCGCCAAAT ATCGCGACCG CGTCGCCGAA
ACCGCCGCCG ATCTCGAAGA GCGACAGGCG CTGCTTGAAA GCGTCGCCGA AAGTCATTTC
GGCATCGATC CGGCCGACAT GGCCACCGCC GCCCAAAAAA CGCATACGTC GGACGCCGCG
CCCGCCGAAC CCGTCAAGAC GAGCGCGATC GACCCGAACC TGCCGCCCGA AGCACAAGTG
CTGGCGCGGC TCGCAGCGCG GCAGGAGGCC TTTGCCGCAC GCCTGCTCGG CGCCGTCAAG
GACCGTGTCG CAAAAGCCGA AACCGCGGTT GCAGCTCTTG GCCTCAACCC CGACACGCTG
GTGCGCAACG CCGCGGCCGG TCGCGGCGGT CCCTTCATTC CCTTTCGTGG CCGCGGGGGT
CAGGCCAAGG CGCTCGGCGC CAGCTTCGCC GCGCTCGATG GTGCGCTGTT CCGCATGGAA
GTTCTCGAAC GCACGCTCGT CGCGGTGCCG TCGGGCAATC CCGCCAATGT TCTGATGATG
TCGTCGGGCT TCGGCTATCG CCGCGACCCC TTCACCGGCG CCGGCGCGAT GCACGCGGGC
GTAGACTTCC GCGGCCCGAT CGGCACGCCG ATCCTTGCCG CCGCGCCGGG CCGCGTCAGC
TTTGTCGGCG TCAAGTCGGG CTATGGCAAT GTCGTCGAAG TCGATCATGG TCAGGGCATC
ATGACGCGCT ATGCCCACTT GTCGGGGTTC ACGACCAGGG CGGGGGTCAA GGTCGCCGCG
GGGCAGCAGA TCGCCAAGAT GGGTTCGACC GGCCGGTCGA CCGGCAGCCA CCTGCATTTC
GAAGTCCGTT TGAACGGCGT CGCGGTCAAT CCGCGCCGCT TCCTGGAGGC CAAAGCCGAT
GTTCTCGAAG TCAAAAACGA CGCACGACAG CGAGTCGTCT CCGTCGCTGC CGCCCGCGGT
GACCGCTAA
 
Protein sequence
MSSKPTGLRD VRQRFNALFQ DHEIFVRTHG HVRFLRVSAL WQKRVALIAG LVLLAWAGAT 
LAVLVNQLLT ADERAAVAAQ KAAAAASEAR IAKYRDRVAE TAADLEERQA LLESVAESHF
GIDPADMATA AQKTHTSDAA PAEPVKTSAI DPNLPPEAQV LARLAARQEA FAARLLGAVK
DRVAKAETAV AALGLNPDTL VRNAAAGRGG PFIPFRGRGG QAKALGASFA ALDGALFRME
VLERTLVAVP SGNPANVLMM SSGFGYRRDP FTGAGAMHAG VDFRGPIGTP ILAAAPGRVS
FVGVKSGYGN VVEVDHGQGI MTRYAHLSGF TTRAGVKVAA GQQIAKMGST GRSTGSHLHF
EVRLNGVAVN PRRFLEAKAD VLEVKNDARQ RVVSVAAARG DR