| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0008 |
|---|
| Symbol | |
|---|
| ID | 4083139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 6735 |
|---|
| End bp | 7511 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638008368 |
|---|
| Product | hydrolase, alpha/beta fold family protein |
|---|
| Protein accession | YP_615067 |
|---|
| Protein GI | 103485506 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3904] Predicted periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0509198 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTCGC CGTCTGCCCT GCTGCGCACG CTGATCGTCG CCGCGCTCGC CGCGGTGCTG
GCGTTCGCGC CCGCGCAGGC ACAGCGGGTC ACGGTCGTCA CCACGACGGT GACATGGACC
CATGCCGACG CGGGCGACGA TGACTTGGGC TATATCGAGG AGGATGCGGC GCTCCTCGAT
GACGAAGCGC TGGCCGAGGA AGAGGCGTTC GCGGCGACGC GGCGCTATGC GCCCACCGCC
ACGCTCGCGA CGCCGGGACA GGCGAAGGCG AGCTTCGGTC CCTTTTCGGT GATCGACGCC
GCAACGGCGC GGATGGCGGG CGACGTCACT TCGGCGACCC CGCGCCAGTT CGCCGCGATG
CTCGCCGCCT TTCCGGGGCT GAAGAGGATC GAGATGATCG ACTGCCCCGG CAGCCTCGAC
GAGGACGCCA ATCTGGCGCT GGCGCGCGCG ATCCGCCGCG CGGGACTGGA AACCGTGGTG
CCCGCGGGCG GCTCGATCCG CTCGGGCGCG GTCGAGCTGT GGCTCGCCGG CGCCACGCGC
CGCGCGGCGC CCGACGCCGA GTTCGGCGTG CATAGCTGGG CCGACGAATA TGGGCGCGAG
GCGAACGACT ATCCGGCGAA CGATCCAGTC CACGCCGACT ATATCGCCCT TTATCGCGAA
ATGGGCATGG ACGCCGCGAA GGCGCGCGAA TTTTACGCGC TGACCAATGC GACGCCATTC
GACGAGGTGC GTTACCTGAC CCGCGACGAT ATGGCGCGGT TTGTCGCGCT CAACTGA
|
|---|
| Protein sequence | MASPSALLRT LIVAALAAVL AFAPAQAQRV TVVTTTVTWT HADAGDDDLG YIEEDAALLD
DEALAEEEAF AATRRYAPTA TLATPGQAKA SFGPFSVIDA ATARMAGDVT SATPRQFAAM
LAAFPGLKRI EMIDCPGSLD EDANLALARA IRRAGLETVV PAGGSIRSGA VELWLAGATR
RAAPDAEFGV HSWADEYGRE ANDYPANDPV HADYIALYRE MGMDAAKARE FYALTNATPF
DEVRYLTRDD MARFVALN
|
|---|
| |