| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3030 |
|---|
| Symbol | |
|---|
| ID | 4076603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 3199021 |
|---|
| End bp | 3199797 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638008359 |
|---|
| Product | short chain enoyl-CoA hydratase |
|---|
| Protein accession | YP_615024 |
|---|
| Protein GI | 99082870 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.390398 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTATG AGACGATCAA CGTCGATACT CAGGACCACG TCTGCCTTAT CAAGCTGAAC
CGGCCTGAAG CGTTGAACGC GCTCAATTCC GTCCTTTTGG GCGAGTTGTG TGCCGCTTTG
GAAGAAGCGG ACGCCAGCGA CAAAGTGCGC TGCATCGTGC TGACCGGATC GGAAAAGGCA
TTTGCAGCGG GCGCCGACAT CAAGGAGATG TCGGAGATGA GCTATGTGGA TGTGTTCACA
TCCAACCTCT TTGCGGACGC CAATGACCGG ATCGCTGCCA TCCGCAAACC GATCATCGCT
GCGGTGTCTG GCTATGCGCT GGGCGGCGGG TGCGAAGTGG CCATGATGTG TGATTTCATC
ATCGCGGCTG AGACCGCGAA ATTCGGCCAG CCCGAGATCA ATCTGGGTGT CATTGCCGGT
ATGGGCGGCA CGCAACGCCT CACCCGTTTT GTGGGCAAGT CGAAGTCGAT GGACATGAAT
CTGACCGGCC GCTTCATGAC TGCCGATGAG GCAGAGCGGG CAGGTCTGGT GTCGCGCGTG
GTTCCGGCCA AAAAGCTGAT CGAAGAGGCG ATGGCAGCAG CCTCTAAGAT CGCCGAGAAA
TCAGTACTGA CCTCGATTGC GGCCAAGGAG GCCGTCAATC GCGCGTATGA ATTGCCGCTT
AGCGAAGGCA TGCTCTTTGA GCGGCGGGTC TTCCATTCCA TGTTTGCGAC GGAAGACCAA
AAGGAAGGTA TGGCAGCGTT TCTAGAAAAA CGCGAAGCCC AGTTCCGAGA CAAGTAA
|
|---|
| Protein sequence | MAYETINVDT QDHVCLIKLN RPEALNALNS VLLGELCAAL EEADASDKVR CIVLTGSEKA
FAAGADIKEM SEMSYVDVFT SNLFADANDR IAAIRKPIIA AVSGYALGGG CEVAMMCDFI
IAAETAKFGQ PEINLGVIAG MGGTQRLTRF VGKSKSMDMN LTGRFMTADE AERAGLVSRV
VPAKKLIEEA MAAASKIAEK SVLTSIAAKE AVNRAYELPL SEGMLFERRV FHSMFATEDQ
KEGMAAFLEK REAQFRDK
|
|---|
| |