Gene TM1040_3029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3029 
Symbol 
ID4076602 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp3198104 
End bp3198955 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content57% 
IMG OID638008358 
Productformamidopyrimidine-DNA glycosylase 
Protein accessionYP_615023 
Protein GI99082869 
COG category[L] Replication, recombination and repair 
COG ID[COG0266] Formamidopyrimidine-DNA glycosylase 
TIGRFAM ID[TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.255462 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGAAT TGCCCGAGGT CGAGACGGTG ATGCGCGGTC TGCAGCCTTC CATGGAGGGT 
GTCGTCATTG CGCGCGCAGA TGTGAATCGG CCAGATCTGC GTTGGCCTTT TCCCGACCGC
ATGACAGAGC GACTGTCTGG GCGGCGGGTG CTCTCGATGC GGCGGCGGTC AAAATACATC
CTTGCCGATC TCGACAGCGG CGAGACGCTT TTGGTTCATC TTGGCATGTC CGGGCGGATG
ACAGTGTCGG GCGACCCGCT GGGGCAGTTT GTGCATTCAC ATCCGCAGCT TGAGAAACAT
GATCATGTGG TCTTTCACAT GGACAATGGC GCACGCGTCA CGTTCAACGA TCCACGCAGG
TTTGGCGCGA TGGATCTTCT GGAGACAGCC AAGGCCGACA GTCATAAGTT GCTGGCAGTT
CTGGGCCCGG AGCCTTTGGG GAACGATTTT CATGAAAGTC ACCTTGTTTC TGCATTCAAA
GGGCGCAGGA CGCCGGTGAA ATCTGCGCTG CTCGATCAGG GAATCATTGC GGGCCTGGGC
AATATCTACG TCTGCGAAGC GCTTTTCAGG GCCGGCATTT CGCCACGTCG CGAAGCTGGA
AAAATCAGCA CATCGCGCGT CACATCGCTG GTTCCGATCA TCCGTCAAGT GTTGCAGGAT
GCGATCGCCG CGGGCGGGTC CTCACTCAAG GATTTCCGCC AAGCTAATGG AGAACTTGGA
TATTTTCAGC ATACCTTTGA TGTCTACGGG CGCGAAGGAG AACCCTGTCG ACGCGCCGGT
TGCACCGGAA CAGTCACTCG AATCACTCAA TCCGGCCGGT CGTCGTTCTA CTGTGGCAAG
TGCCAAAGAT AA
 
Protein sequence
MPELPEVETV MRGLQPSMEG VVIARADVNR PDLRWPFPDR MTERLSGRRV LSMRRRSKYI 
LADLDSGETL LVHLGMSGRM TVSGDPLGQF VHSHPQLEKH DHVVFHMDNG ARVTFNDPRR
FGAMDLLETA KADSHKLLAV LGPEPLGNDF HESHLVSAFK GRRTPVKSAL LDQGIIAGLG
NIYVCEALFR AGISPRREAG KISTSRVTSL VPIIRQVLQD AIAAGGSSLK DFRQANGELG
YFQHTFDVYG REGEPCRRAG CTGTVTRITQ SGRSSFYCGK CQR