Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3029 |
Symbol | |
ID | 4076602 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 3198104 |
End bp | 3198955 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 638008358 |
Product | formamidopyrimidine-DNA glycosylase |
Protein accession | YP_615023 |
Protein GI | 99082869 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.255462 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGAAT TGCCCGAGGT CGAGACGGTG ATGCGCGGTC TGCAGCCTTC CATGGAGGGT GTCGTCATTG CGCGCGCAGA TGTGAATCGG CCAGATCTGC GTTGGCCTTT TCCCGACCGC ATGACAGAGC GACTGTCTGG GCGGCGGGTG CTCTCGATGC GGCGGCGGTC AAAATACATC CTTGCCGATC TCGACAGCGG CGAGACGCTT TTGGTTCATC TTGGCATGTC CGGGCGGATG ACAGTGTCGG GCGACCCGCT GGGGCAGTTT GTGCATTCAC ATCCGCAGCT TGAGAAACAT GATCATGTGG TCTTTCACAT GGACAATGGC GCACGCGTCA CGTTCAACGA TCCACGCAGG TTTGGCGCGA TGGATCTTCT GGAGACAGCC AAGGCCGACA GTCATAAGTT GCTGGCAGTT CTGGGCCCGG AGCCTTTGGG GAACGATTTT CATGAAAGTC ACCTTGTTTC TGCATTCAAA GGGCGCAGGA CGCCGGTGAA ATCTGCGCTG CTCGATCAGG GAATCATTGC GGGCCTGGGC AATATCTACG TCTGCGAAGC GCTTTTCAGG GCCGGCATTT CGCCACGTCG CGAAGCTGGA AAAATCAGCA CATCGCGCGT CACATCGCTG GTTCCGATCA TCCGTCAAGT GTTGCAGGAT GCGATCGCCG CGGGCGGGTC CTCACTCAAG GATTTCCGCC AAGCTAATGG AGAACTTGGA TATTTTCAGC ATACCTTTGA TGTCTACGGG CGCGAAGGAG AACCCTGTCG ACGCGCCGGT TGCACCGGAA CAGTCACTCG AATCACTCAA TCCGGCCGGT CGTCGTTCTA CTGTGGCAAG TGCCAAAGAT AA
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Protein sequence | MPELPEVETV MRGLQPSMEG VVIARADVNR PDLRWPFPDR MTERLSGRRV LSMRRRSKYI LADLDSGETL LVHLGMSGRM TVSGDPLGQF VHSHPQLEKH DHVVFHMDNG ARVTFNDPRR FGAMDLLETA KADSHKLLAV LGPEPLGNDF HESHLVSAFK GRRTPVKSAL LDQGIIAGLG NIYVCEALFR AGISPRREAG KISTSRVTSL VPIIRQVLQD AIAAGGSSLK DFRQANGELG YFQHTFDVYG REGEPCRRAG CTGTVTRITQ SGRSSFYCGK CQR
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