| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3025 |
|---|
| Symbol | |
|---|
| ID | 4076598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 3193775 |
|---|
| End bp | 3194341 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638008354 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_615019 |
|---|
| Protein GI | 99082865 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1396] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.314698 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.932142 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGACA CAACAGACGA TATCCTGACC CTCCTACCCG CACGCCTTAA AGAGGCACGA
CGGGCGCAGG GCTTGAGCCT TGAAGCCGTG GCAAACCTCT CGGGGGTCAG CCGTTCGATG
GTGAGCCAAA TTGAACGTGG CGAAAGTTCA CCAACCATCG CAACGCTCTG GAACCTCACT
CGTGCCCTCC AGGTGGATTT CGCAGGTCTC CTCGAGGCCG GAGAAGCCGC AGATCGGATC
GACGTGCTGC GCGCGCGCGA TGTGCCAGTG ATCGACAGCA AAGCCGCCCA TTGCACGATC
GCCATCCTCT CTCCGCCTGA GGATGTGGGA GGTCATGAGG TCTATGACAT CAGCTTTGCT
TCCGGCGGCG CGCTGATCAG TCAGCCGCAT GCGCCCGGCA CTCGCGAACA ACTGACCGTC
CTGGAAGGCC GCGTGGTTTT GACCTCTGGA ACCGCCGAGG ATCGGCTCGA ACCAGGCGAC
ACAGCCCGAT ATGCAGCGGA CGTGGCACAT GCCATCGCGG CACCTGACGG GACTGCGCGC
GTCTTTCTGA TCGTAAAGAA CGGCTGA
|
|---|
| Protein sequence | MTDTTDDILT LLPARLKEAR RAQGLSLEAV ANLSGVSRSM VSQIERGESS PTIATLWNLT
RALQVDFAGL LEAGEAADRI DVLRARDVPV IDSKAAHCTI AILSPPEDVG GHEVYDISFA
SGGALISQPH APGTREQLTV LEGRVVLTSG TAEDRLEPGD TARYAADVAH AIAAPDGTAR
VFLIVKNG
|
|---|
| |