| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3009 |
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| Symbol | dapD |
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| ID | 4076582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 3177816 |
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| End bp | 3178643 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638008338 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_615003 |
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| Protein GI | 161899026 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.297479 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAACG CGCAGCTGGA AACCGCAATT GAGGCCGCCT GGGAGGCCCG TGACACCATC
ACACCTGCCA CCAAAGGTGA AACCCGCGAC GCCATCGAGG CAACCCTCGC CGCGCTCGAT
AGCGGGAAAC TGCGCGTCGC AGAAAAGCAG GACAGCGGTG ACTGGCACGT CAACCAATGG
GCCAAAAAGG CCGTTTTGCT TGGTTTCCGC CTGAAGGACA TGGAAGAGCA ATCTGGTGGC
CCGCAGGGCT CCGGCTGGTG GGACAAGGTC GACAGCAAGT TCAAAGGCTG GGAAGCCGCT
GACTGGAAAA CCGCTGGTTT CCGCGCGGTG CCGAACTGCG TTGTCCGCAA ATCTGCCTAC
ATCGCACCGG GCGTGGTCTT GATGCCCTCT TTTGTAAACC TCGGCGCCTA TGTCGACGAA
GGCACTATGG TCGACACTTG GGCCACGGTT GGATCTTGCG CACAGATCGG CAAAGGCGTT
CACCTCTCGG GTGGCGTCGG GATCGGCGGC GTTCTGGAGC CGATGCAGGC CGGCCCGACC
ATCATCGAGG ACAATTGCTT TATCGGTGCG CGTTCCGAGG TGGTCGAAGG CGTGATCGTG
CGCGAAGGTT CCGTGCTTGG CATGGGCGTG TTCATTGGCC AGTCCACCAA GATCGTCGAC
CGCGAAACCG GTGAAGTCAT GTACGGCGAA GTGCCGCCCT ATTCCGTTGT TGTTGCAGGC
TCCATGCCCT CGAAAAACGG CATCAACCTC TACTGCGCGG TCATCGTGAA ACGCGTGGAC
GAGAAAACCC GTTCCAAGAC AGGCATCAAC GAGCTTCTGC GCGATTGA
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| Protein sequence | MSNAQLETAI EAAWEARDTI TPATKGETRD AIEATLAALD SGKLRVAEKQ DSGDWHVNQW
AKKAVLLGFR LKDMEEQSGG PQGSGWWDKV DSKFKGWEAA DWKTAGFRAV PNCVVRKSAY
IAPGVVLMPS FVNLGAYVDE GTMVDTWATV GSCAQIGKGV HLSGGVGIGG VLEPMQAGPT
IIEDNCFIGA RSEVVEGVIV REGSVLGMGV FIGQSTKIVD RETGEVMYGE VPPYSVVVAG
SMPSKNGINL YCAVIVKRVD EKTRSKTGIN ELLRD
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