| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3000 |
|---|
| Symbol | |
|---|
| ID | 4078030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 3167703 |
|---|
| End bp | 3169283 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638008329 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_614994 |
|---|
| Protein GI | 99082840 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.592771 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.37885 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACGG CTCAGGAACT ACCGATTGAT ACAACCGCCT CTGCCGAGGA CATGGCGGAA
GCCATTTTTG GCAATGGCAT CGAGATTCAA TCCGCGACCT ACACCGGCGC TAACGGTGCG
TCCGGCATCT ACAGCGGCGG TGATTCAATC ACGCCGGGTG TGACCCCATC GGACACTGGC
GTTATCCTGT CCACTGGCAA CGCAACGGAT TTCACCAATA GCTCGGGCAG CACGGATACC
AATACCTCTG CCGGGACATC CACCAATCAC GGAACCGCGG GCGATACGGA TCTGGATGCG
ATCGCAGGTG GAACGACCTA TGATGCCGCC GTCTTTGAGG CCGAATTTGT GCCCGAAGGC
TCCACACTGA CGATGCAGTT CGTCTTTTCC TCCGAAGAGT ATCTCGAATA CGTCAATTCA
GGCTTCAACG ATGCGGTGTC GGTCTGGGTC AATGGTGTTG AGGCGGAACT GGTAGTGGGC
GATGGCAATA TCGCCATCGA CAACATCAAT GATACGTCCA ATTCGGATCT CTACGTCGAC
AACCCCGCGG ACAGTGATCT CTACAACACT GAAATGGACG GGTTTACCGT CACGTTGAAG
CTGACAGCGC CGGTCAACCC AGGCGAAACC AACCACATCA AGATTGCCAT CGCCGATACA
GGAGATGCCG CTTACGATTC CAACCTGCTG ATTGCCGGGG ACTCGGTGCA GACGGCGTTG
GTTGCGGAAA ACGATCAGGT GCTGGTCTGG GAGGGCTCAT CCACGACCGT TGACGTGCTT
GCCAATGATG CGCAAGGGTC AGGCGCTCAG CTCACCATCA CACATATCAA CAACCAGCCT
GTCACGGCTG GCAGTTCGGT GACATTGGCA AATGGCGAAA TCATCACCCT CAACGAAGAC
GGCACCCTCG AGATCACAGG CCAGCCCGAC GTGGATACGG ATGAGACGTC CGTCTTCACC
TACACGGTGG CCGATGATGA AGGAAATACC GACGTTGCTT TTGTCGATCT GACCACCACG
CCCTGCTTTG TCGAAGGTAC CTTGATCGAT ACAACCGAAG GCCCGTGCCC GGTCGAGGCG
TTGGAAATTG GCATGACCGT CGTGACCCGT GACCACGGTG CTCAGCCGCT GCGCTGGATT
GGGCGCAGCA TTCGTACGGC GTCGGGCAAT GATGCGCCCG TTCGGATTGC CGCAAACACT
CTGGGCCAGC ACCAGGAGAT CGAACTCTCG CCGAGCCATC GAGTGCTATT GTGCTCTGCC
GCCGCCGAGA TGCTCTTTGG TCAAGAAGAA GTTTTGATCC CGGCGCATCA TCTGGTAAAT
GACAGCACCA TCCGGCGTCG CAGTGACGGG CGGCGCGTTA CCTATTTCCA CCTGCTGTTC
GACCAGCATG AAATCATTCG TGGCAATGGG CTTGAGAGTG AGAGCTATCA TCCGGGTGCC
GCGAGCCTCG GTGGATTGGA TGCAGAGACA CGGGCGGAGT TCTTCGATCT GATGGGCGAC
AGCTGGCAGA GCTATCAGAA TATGAAACGC CCGACACTCA AATCATATGA GACCCGCGCG
TTGCTGGGGG CCGTTCAGTA A
|
|---|
| Protein sequence | MPTAQELPID TTASAEDMAE AIFGNGIEIQ SATYTGANGA SGIYSGGDSI TPGVTPSDTG
VILSTGNATD FTNSSGSTDT NTSAGTSTNH GTAGDTDLDA IAGGTTYDAA VFEAEFVPEG
STLTMQFVFS SEEYLEYVNS GFNDAVSVWV NGVEAELVVG DGNIAIDNIN DTSNSDLYVD
NPADSDLYNT EMDGFTVTLK LTAPVNPGET NHIKIAIADT GDAAYDSNLL IAGDSVQTAL
VAENDQVLVW EGSSTTVDVL ANDAQGSGAQ LTITHINNQP VTAGSSVTLA NGEIITLNED
GTLEITGQPD VDTDETSVFT YTVADDEGNT DVAFVDLTTT PCFVEGTLID TTEGPCPVEA
LEIGMTVVTR DHGAQPLRWI GRSIRTASGN DAPVRIAANT LGQHQEIELS PSHRVLLCSA
AAEMLFGQEE VLIPAHHLVN DSTIRRRSDG RRVTYFHLLF DQHEIIRGNG LESESYHPGA
ASLGGLDAET RAEFFDLMGD SWQSYQNMKR PTLKSYETRA LLGAVQ
|
|---|
| |