| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2998 |
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| Symbol | |
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| ID | 4078028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 3166064 |
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| End bp | 3167128 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638008327 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_614992 |
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| Protein GI | 99082838 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.593817 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.519466 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTGC GCTCTATTTG GTTTTGTCTT GTCACAGTGT TGATGACCCT TCCAGCCTTG
CCGCTGCGCG CGCAGGAACT GGTGGTCAAC ACGGTTACCC GTCCGCCGTT TTCAATGCCG
GTCGGAGAGC ATGAGACGGG TTTTACCATG GATTTGATCC GCGAGGTCTC GCAACGCCTC
GGTTGGGACA TCCAGATCAA TCGGGTCGAT AACTTTGCGC AGATGCTCGA AGAGGTCGAA
CGCGGCGAGG CCGATATGGC GGCGGCAAAC ATCTCCATCA CGGCCGGGCG TGAAGCGGTA
ATGGATTTCA GTCAGCCCAT CTTTGAAAGC GGCCTGCAGA TCATGCTGCA TCAGGACGAT
GTGTCAGAGC CAAGCCTGAT TTCGGCGCTG ATGTCGTGGG ATCTCTTCGC GGCCATCGCA
ATCGCATTTG TGCTCTTGCT GGTGGGCGGC ATGCTTATGT GGGTGTTTGA GCGCCGAGCG
CAGCCCTATT TTGATCGCCC GTTGAAAGAT GCGTGGTTCC CATCTTTCTG GTGGGCTCTC
AATCTGGTGG TGAACGGTGG TTTTGAAGAG CGGGTGCCGC GCAGCGCGCT TGGGCGGGTT
TTTGGTGTTC TGCTGGTTCT CTCATCATTG TTCGTGGTGT CGGTCTTTGT CGCCAAAATC
ACCGCCGCCA TGACCGTCGA GGCGATCAAC GGGTCGGTGA ATTCGGTGAA CGACCTCTAC
GGCAAGCGCG TCGGCACGAT CCAGGGCTCC ACCGCGGCAG GATTTCTGGA TCGTCGTGAA
ATCGACTATG TGGCGTTTCC GGGGCTCGAT AAGATGCTCG AGGACTTTGA AGACGGCGAT
ACGCGCATAG TCGTGTTTGA TGCGCCGGTG CTCAACCACT ACGTCAAAAC CGACGGTGCG
GGGATCGGGC ATGTGATGGG GCGGAAGTTC CTGACGGAAT ACTACGGGAT TATCTTCCCG
CAGGGGTCCG ACATGGTGGA GCCGTTCAAT CGTGCCTTGC TGAAGATGCA GGAAGACGGC
GCCTACGAGA CGCTCTATCG AAAGTGGTTT GGTCAGAGTT TCTAG
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| Protein sequence | MTLRSIWFCL VTVLMTLPAL PLRAQELVVN TVTRPPFSMP VGEHETGFTM DLIREVSQRL
GWDIQINRVD NFAQMLEEVE RGEADMAAAN ISITAGREAV MDFSQPIFES GLQIMLHQDD
VSEPSLISAL MSWDLFAAIA IAFVLLLVGG MLMWVFERRA QPYFDRPLKD AWFPSFWWAL
NLVVNGGFEE RVPRSALGRV FGVLLVLSSL FVVSVFVAKI TAAMTVEAIN GSVNSVNDLY
GKRVGTIQGS TAAGFLDRRE IDYVAFPGLD KMLEDFEDGD TRIVVFDAPV LNHYVKTDGA
GIGHVMGRKF LTEYYGIIFP QGSDMVEPFN RALLKMQEDG AYETLYRKWF GQSF
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