| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2996 |
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| Symbol | |
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| ID | 4078026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 3163282 |
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| End bp | 3164427 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638008325 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_614990 |
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| Protein GI | 99082836 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.343819 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACAA CAGACCCCGT TCAGCTCACC GCAGATCTTG TGCGTTGTCC TTCGGTCACG
CCAACCGAGG GTGGTGCGCT GGTCCTTTTG GAGCGCCTTC TGACGGACGC GGGTTTTAGC
TGCACACGGG TTGACCGGGG TGAGGTCTGC AATCTCTTTG CCCGCTGGGG CGACAAGGCG
CATGCGCGTA CCTTTGGGTT CAATGGCCAC ACTGACGTGG TGCCCATCGG GGACGAAGCG
GCCTGGACTC ACGATCCCTT TGGCGCCGAG ATTGTCGAAG GCGTCATGTA TGGCCGTGGG
ACAACCGACA TGAAGTCCGG TGTTGCTGCC TTTGCGGCGG CAGCCATAGA CTTTGTTCAG
GACACACCAC CCGATGGCGC AGTGGTGCTG ACCATCACAG GTGATGAGGA AGGCGACGCT
GTGGATGGAA CCACGGCATT GCTGGACTAC ATGGACGCAG CGGGCGAGAA GATGTCCGTT
TGCCTCGTGG GAGAGCCCAC GTGCCCCAAT CATATGGGTG AGATGATCAA GATCGGTCGT
CGCGGCTCGA TGACCGCGTG GTTCACTGTG ACCGGCGTGC AGGGACATTC GGCCTATCCG
CACCGTGCGA ACAACCCGAT GAACGGGCTC GCGCGCCTGA TGGACCGACT CGGCAGCCAT
CAACTGGATG AGGGCTCAGA GCACTTCGAC GCCTCTACAC TGGCAATTGT CACCATCGAC
ACCGGCAACC CGGCAACCAA TGTGATCCCG GCGCAGGGCC GTGCCGCGGT GAACATCCGC
TTCAATGATC TGCACTCGGG GGCGTCGCTT ACAGATTGGC TGCAAGGCGA AGCAGACAAA
GTGGCCAAAG AGTTTGGTCT TGAGGTCGAT ATGAAGGTTC AGATCTCGGG TGAAAGTTTC
ATCACCCCGC CGGGCGATCT GTCGGATCTG GTCTCTCGGG CCGTGCAGAC CGAAACCAAC
CAAGCACCGG AACTCTCCAC CACCGGGGGC ACCTCAGACG CGCGATTTGT GAAGTCCCAT
TGTCCGGTTG TGGAATTTGG CCTCGTCGGC AAGACCATGC ACCAGGTGGA TGAGAACGTG
GATGTGGCCC ATATCCACCA ACTGAAATCC ATCTACTCCC GCATCCTGAA GGACTATTTT
TCATGA
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| Protein sequence | MTTTDPVQLT ADLVRCPSVT PTEGGALVLL ERLLTDAGFS CTRVDRGEVC NLFARWGDKA
HARTFGFNGH TDVVPIGDEA AWTHDPFGAE IVEGVMYGRG TTDMKSGVAA FAAAAIDFVQ
DTPPDGAVVL TITGDEEGDA VDGTTALLDY MDAAGEKMSV CLVGEPTCPN HMGEMIKIGR
RGSMTAWFTV TGVQGHSAYP HRANNPMNGL ARLMDRLGSH QLDEGSEHFD ASTLAIVTID
TGNPATNVIP AQGRAAVNIR FNDLHSGASL TDWLQGEADK VAKEFGLEVD MKVQISGESF
ITPPGDLSDL VSRAVQTETN QAPELSTTGG TSDARFVKSH CPVVEFGLVG KTMHQVDENV
DVAHIHQLKS IYSRILKDYF S
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