| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2994 |
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| Symbol | |
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| ID | 4078024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 3160462 |
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| End bp | 3162747 |
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| Gene Length | 2286 bp |
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| Protein Length | 761 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638008323 |
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| Product | RNAse R |
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| Protein accession | YP_614988 |
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| Protein GI | 99082834 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.390398 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGTA TACCCACAAA GGCCGAGATT CTGGAATGGA TCTCCGCCCA CCCGACTCAG
ACTTCTAAAC GTGACATTGC CAAAGCCTTT GGCATCAAGG GCGCAGAGCG GATCGATCTC
AAGCGCGTCT TGAAGGAGCT GGAGGCAGAA GGGCATCTCG AAAAGCGCAA ACGCAGCTAC
ACCGATCCGG ACCGTTTGCC GCCAGTCTCA GTCTTGCTGG TCAAAGCGCC TGATGAAAAT
GGCGATCTCT TTGCGCAGCC ACTTGAATGG CATGGCGAAG GGATTGAACC AATCGTAATG
GTGATCCCGC GTGCCTCGGA CCCGGCGCTT GGAGAAGGCG ACCGGATCCT GGCGCGCCTC
ACGGTGGTGC AGGAAGAAGA CCACAATTAC GAGGCTCGGC TGATCCGGCG CATCGGAACC
AATCCCAAAC GCATTCTCGG GATCTTTCGT CAAGGCTCGG AAGGTGGGCG GATTGTGCCC
ATCGACAAGG CCAGCTCGAA CGAATGGCAG GTGCCCGAGG CCAATGTACA CGGCGCTAAA
GATGGCGAGT TGGTCGAAGC CGAGCTTGCG GGTCCAAAGG CGAGAATGGG ACTGCCCAAA
GCCCGGATCG TTGAACGTCT GGGCGACCCC TCGGCACCCA AGGCGGTATC GCTGATCGCA
ATCCATCAGC ACGGCATACC AGATCACTTT CCAGATGCGG TGATCGCAGA AGCCGACAGC
GCCAAACCTA TGGGGCTCAA GGGACGTGAA GACCTGCGGG ATCTGCCGCT CATTACCATC
GACCCAGCCG ATGCACGCGA TCATGATGAT GCGTGCTTTG CCCATGCCGA TGAGGATCCC
ATGAACCCCG GAGGCCATGT CATATGGGTC GCAATCGCCG ATGTTGCCGC CTATGTGACA
CCCGGCTCAG CATTGGATCG CGAGGCGCGA AAACGGGGCA ACTCCAGCTA TTTTCCGGAC
CGGGTGGTGC CTATGCTCCC GGATCGTCTT TCGGGGGATC TGTGCTCGTT GCACGAAGGT
GTGCCCCGCC CCTGTCTGGC CGTTCGCCTG CAGATCGACG CAGAGGGACA CAAGATAGGC
CACCGTTTTG TACGCGGTCT GATGAAATCG CAGGCTTCAC TGCACTATGG CGAAGTGCAG
GAGGCCATGG ATGGTAAGAT CACTGAGCGC ACGGAACCGT TTCTCGAAGA CGTGATCAAA
CCGCTCTATG CAGCCTATGA AGCCCTCAAG GCCGCCCGCG CCGCGCGTCA GCCGCTTGAT
CTCGACCTTC CCGAACGCAA AATCGTCCTC GATGACAAGG GTAAGGTCGC CTCCGTCAAT
TTCCGCGATC GCTTGGATGC TCATCGCCTG ATCGAAGAGT TCATGGTGCT TGCAAATGTC
GCAGCCGCTG AAACACTGAT TAAGAAGCGC CAGCCGCTTT TGTTCCGGGT CCATGAGGAA
CCCAGCCAGG ACAAGCTTGA TGCCTTGCGT GACACTGCGC AGGCCGCTGG TCTCAACCTT
GCAAAAGGGC AAGTGCTGCA GACCCGACAC CTGAACGCCT TGCTGAATGC GGCGGCAGGC
ACAGATGATG CGGAGCTCAT CAATATCTCC ACGCTGCGCT CCATGCAGCA GGCCTATTAC
TATCCAGAGA ACTTTGGGCA CTTTGGTCTG GCTCTGCGCA ATTACGCGCA TTTCACCTCG
CCCATCCGTC GCTATGCGGA CCTGATCGTA CACCGCGCCC TGATTACGGC GCATGGCTGG
GGCAAAGATG GGCTCTCGGC GGACGAGATT GAGCGATTAG AAGATACAGC AACGCATATC
TCGGCGACCG AGCGGCGCTC GATGCTGGCC GAGCGCGACA CCACGGACCG CTATCTGGCC
TCCTACCTCG CAGAGCGTGT GGGCAATGAG TTCTCCGGCC GGATCTCCGG GATCGCCCGT
TTCGGGGCTT TTGTGAAACT GGATGAAACC GGCGCCGATG GGTTGGTGCC CGTTCGGTCG
ATCGGGCAGG AGTATTTCCA TTTTGATGCA CAGGCCGGCA CATTGATGGG GTCGGATACC
GGTCTGTTGA TCACCATTGG CCAACGCGTG ACCGTGCGCC TCACAGAGGC CGCGCCAGTC
ACCGGCGGGC TCGAATTGGA ACTGCTGGCG CTTGAAGGCG CAGACCTGCC AAAAGGCCGT
GGTGGAAGCC GCAAAGGCGG CCGCCGCCGC AGCCCGGCGG GACGCACCAT GACCCGGAGC
AAGGCCGCGA AATCCAAGAC CAAAGCAGAC AAGATCAAAC GAAAAGTAAC ACGCAAGCGG
AAGTAA
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| Protein sequence | MARIPTKAEI LEWISAHPTQ TSKRDIAKAF GIKGAERIDL KRVLKELEAE GHLEKRKRSY
TDPDRLPPVS VLLVKAPDEN GDLFAQPLEW HGEGIEPIVM VIPRASDPAL GEGDRILARL
TVVQEEDHNY EARLIRRIGT NPKRILGIFR QGSEGGRIVP IDKASSNEWQ VPEANVHGAK
DGELVEAELA GPKARMGLPK ARIVERLGDP SAPKAVSLIA IHQHGIPDHF PDAVIAEADS
AKPMGLKGRE DLRDLPLITI DPADARDHDD ACFAHADEDP MNPGGHVIWV AIADVAAYVT
PGSALDREAR KRGNSSYFPD RVVPMLPDRL SGDLCSLHEG VPRPCLAVRL QIDAEGHKIG
HRFVRGLMKS QASLHYGEVQ EAMDGKITER TEPFLEDVIK PLYAAYEALK AARAARQPLD
LDLPERKIVL DDKGKVASVN FRDRLDAHRL IEEFMVLANV AAAETLIKKR QPLLFRVHEE
PSQDKLDALR DTAQAAGLNL AKGQVLQTRH LNALLNAAAG TDDAELINIS TLRSMQQAYY
YPENFGHFGL ALRNYAHFTS PIRRYADLIV HRALITAHGW GKDGLSADEI ERLEDTATHI
SATERRSMLA ERDTTDRYLA SYLAERVGNE FSGRISGIAR FGAFVKLDET GADGLVPVRS
IGQEYFHFDA QAGTLMGSDT GLLITIGQRV TVRLTEAAPV TGGLELELLA LEGADLPKGR
GGSRKGGRRR SPAGRTMTRS KAAKSKTKAD KIKRKVTRKR K
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