| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2984 |
|---|
| Symbol | |
|---|
| ID | 4078014 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 3148365 |
|---|
| End bp | 3149453 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638008313 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_614978 |
|---|
| Protein GI | 99082824 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.746343 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCA AAACGGCCAC CATCGTGTCC GCCATCGCAC TCAGCGCTGC TGCAGCCGCA
TCAGCCGACG AAGTCCGCGT TTACAACTGG TCCGACTACA TCGACGAATC GCTGCTGGCG
AAGTTCGAAG AAGAAACCGG CATCGAACTG ATCTATGACG TCTTTGACTC CAACGAACTG
CTCGAGACAA AAATGCTCGC TGGCGGCTCG GGCTATGACG TCGTGGTTCC CACCGGTTCC
TTCCTGCAGC GTCAGATCCA GGCAGGTGTG TTCCAGAAGA TCGACCGCGA GAAACTTACC
AACTACGGCA ACGTCTGGGA TGTGATCCAA GAGCGCAACG CGCGCTTTGA CCCCGACAAC
GCCTACTCCA TCAACTACAT GTGGGGCACC ACTGGCCTCG GGACCAACCT TGGCAAGGTT
GCCGAAGCAC TGGGCGACGA TGCCCCGATC GACAGCCTGT CGCTGGTTTT TGACCCGGCC
AACATGGAAA AGCTCTCCGA ATGTGGTGTG CATTTCCTCG ATGCGCCCAC AGAGATGATG
CCCGCAGCCC TCACGTATCT GGGCCTTGAT CCCAACACCG AAGACAAAGC GGAACTGGAG
CGGGCGGCAG ACGTACTGGA AGCGGTTCGC CCCTACGTGC AGAAGTTCCA CTCGTCAGAA
TACATCAACG CCTTGGCAAA TGGTGACATC TGCGTCGCCT TTGGCTGGTC TGGTGACATC
CTTCAGGCGC GTGACCGTGC AGCCGAAGCC GATAACGGTG TCGAAATTGC ATATAACGCT
CCGTCCGAAG GGGCGCTGAT GTGGTTTGAC CAGATGGCGA TCCCGGTTGA TGCGCCAAAC
CCGGAGGCCG CACATAAGTT CCTCGACTTC ATGCTGGATG CGCAGAACAT GGCGACCGCG
TCGAACTACG TGTACTACGC TAACGGCAAC AAGGCGTCTC AGGAGTTCCT CGAAGACGAT
GTGATCAATG ATCCAGCGAT CTACCCCACG CCGGAAGCCA TGGAGAACAC CTACATCAAA
GCGCCATATT CTCAGAAGGC CCAGCGCGTT GTCACCCGTC TGTGGACCCG CGTGAAGTCC
GGCACCTGA
|
|---|
| Protein sequence | MKTKTATIVS AIALSAAAAA SADEVRVYNW SDYIDESLLA KFEEETGIEL IYDVFDSNEL
LETKMLAGGS GYDVVVPTGS FLQRQIQAGV FQKIDREKLT NYGNVWDVIQ ERNARFDPDN
AYSINYMWGT TGLGTNLGKV AEALGDDAPI DSLSLVFDPA NMEKLSECGV HFLDAPTEMM
PAALTYLGLD PNTEDKAELE RAADVLEAVR PYVQKFHSSE YINALANGDI CVAFGWSGDI
LQARDRAAEA DNGVEIAYNA PSEGALMWFD QMAIPVDAPN PEAAHKFLDF MLDAQNMATA
SNYVYYANGN KASQEFLEDD VINDPAIYPT PEAMENTYIK APYSQKAQRV VTRLWTRVKS
GT
|
|---|
| |