| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2983 |
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| Symbol | |
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| ID | 4078013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 3147135 |
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| End bp | 3148331 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638008312 |
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| Product | spermidine/putrescine ABC transporter ATP-binding subunit |
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| Protein accession | YP_614977 |
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| Protein GI | 99082823 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.873415 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.790419 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGCCC CGCCCACCTC ACCTACACAA GATGACGGGC CGGTACCAAC CGCCCGCATG
GGGGAAAACT TGGCAATACC GGTATTCGAA CCCTGGACCG ACCCACAGGC TAAGCCACTG
ATTCAGTTCC AGAATGTCAC CAAACGCTTT GGCGATTTCA CCGCAATCGA CGACCTGACA
ATCGACATCT ACGAGCGTGA GTTCTTTGCG CTTCTGGGGC CGTCTGGCTG TGGCAAGACC
ACGATGATGC GAATGTTGGC CGGGTTTGAA ACACCGACAG AGGGAAAGAT CTTTCTGGCC
GGGCAGGATA TCGCCCCCGT CCCCCCCAAC CAGCGCGCGG TCAACATGAT GTTTCAGTCC
TATGCGCTGT TTCCGCATCT CAGCGTTTGG GAGAATATCG CCTTTGGACT CAAGCGCGAA
GGCCTGCCCC GCAATGAGAT CAACGCACGC GTCGACGAGA TGCTGCGCCT GACGCGACTC
GAAAAATTTG CACGTCGCAA GCCTCATCAG ATCTCGGGAG GTCAGCGGCA GCGGGTTGCT
CTGGCCCGCA GTCTGGCAAA GGCACCCAAA CTGCTGCTTC TGGATGAGCC CCTCGGGGCG
CTCGACAAGA AACTGCGCGA AGAAACGCAG TTCGAGTTGA TGGACATCCA GGAAAAGACC
GGCACCACAT TTGTCATCGT GACCCACGAC CAGGAAGAAG CGATGACCGT CGCAAGCCGT
GTGGCCGTGA TGGACAATGG CAAGGTGATG CAGGTCGCAA CCCCCGCCGA CATCTACGAA
GCCCCGAATT CAGTCTATGT TGCTGATTTT ATTGGCGACG TGAACCTTAT TGAGGGCAAG
GCAACTGCCA CGGGCGAAGA TAGCTACGCT CTGCATTGGC GTGAGGGCGC AGCCCCGCTC
ACTGTAAAAT CGCCCAACAA GATCTCTGAC GGCCAGAAAG CACATCTGGC CATCCGCCCC
GAGAAAGTGA CCATCAGTTC AGAAAAGCCT GAGGCCGCCG ACAATGTTGT TCAGGGCAAG
GTCCTCGACA TTGCATATCT CGGCAACCTT TCGACATATC ACGTCGAGCT ACCCACCGGG
GATGTCATCA AGGCTCAAAC GGCCAATACG CGCCGGATTT CCCGTCGCGC CTACACATGG
GAAGACACCG TCTGGCTGTC CTGGACAGCC ACCGGCGGTG TCTTGTTGGG GGAATAA
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| Protein sequence | MHAPPTSPTQ DDGPVPTARM GENLAIPVFE PWTDPQAKPL IQFQNVTKRF GDFTAIDDLT
IDIYEREFFA LLGPSGCGKT TMMRMLAGFE TPTEGKIFLA GQDIAPVPPN QRAVNMMFQS
YALFPHLSVW ENIAFGLKRE GLPRNEINAR VDEMLRLTRL EKFARRKPHQ ISGGQRQRVA
LARSLAKAPK LLLLDEPLGA LDKKLREETQ FELMDIQEKT GTTFVIVTHD QEEAMTVASR
VAVMDNGKVM QVATPADIYE APNSVYVADF IGDVNLIEGK ATATGEDSYA LHWREGAAPL
TVKSPNKISD GQKAHLAIRP EKVTISSEKP EAADNVVQGK VLDIAYLGNL STYHVELPTG
DVIKAQTANT RRISRRAYTW EDTVWLSWTA TGGVLLGE
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