| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2947 |
|---|
| Symbol | fliF |
|---|
| ID | 4077098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 3115828 |
|---|
| End bp | 3117543 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638008276 |
|---|
| Product | flagellar MS-ring protein |
|---|
| Protein accession | YP_614941 |
|---|
| Protein GI | 99082787 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
|---|
| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.532246 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCAGGCCG GAGAGAACGC CGGTGCGACG GAGGTTAATG TGCAGCAGAT CAAGAATGTC
TGGGCAGGTT TGGACAAGCG GAAGCGGATG ATGGCGATCG GGGCGACTCT CGCCGTGATC
TTTACTTTCT TCCTCATGTC CTTGGTGGCG AACAAGCCAT CCATGCAACT ATTATATGCT
GGGCTCGAAA GCAGCTCAGC CGGAGATGTT GTCAGCGCTT TGGAACAAAG TGGTGTCGAC
TATGAAGTAC GTGGCGGGTC GATTTACGTG CCCTCCAGCA AACGCGACGA GCTGCGAATG
ACGCTCGCAA GCCAAGGCCT GCCTGCAAAC GGCGGCAAAG GCTACGAGCT GCTCGATTCG
CTAAGTGGGT TTGGAACCAC TTCGCAAATG TTTGACGCGG CCTATTGGCG CGCCAAAGAA
GGCGAACTGG CGCGAACAAT CGTTGCGAAT CCTCATGTAA GCCAGGCACG GGTCCATATT
GCCAACACCG GCAGCAACCC GTTCCAAAGG ACAATTGAAC CGACCGCTTC TGTTTCTGTG
ACACCGATGG GTTCGCCCAT CACACCATCG CAGGCAAACG CGATTCGCTT CCTTGTTGCC
TCGGCGGTTG CCGGGCTCGC GGTTGACAAT GTCGCTGTGA TCGACGCCAA CGGCGCGCTT
ATTGGCTCGC CTGAGGCCGC CGCGGCTGCG GGTGCGGGCA CTGACGACAG ATCACAAACC
CTGCGCGAGC GTGTCCTGCG ACTCGTCGAA GCGCGGGTTG GCCAAGGCAA TGCTGTTGTG
GAAATCAGTG TCGAGACGAT CACAGACACC GAATCCATTC GAGAAAAACG AGTCGATCCG
CAAAGTCGTG TTGCGATCAG CACCGATGTC GAAGAGCGCA TCGACTCCTC TCAAAATCAG
GCCGGAGAAG TCACTGTTGC CTCCAATATT CCGGATGGAG ACGCCGGCAA CGGTGAAGGC
TCCAAGGCCA GCACCAATGC AACCCGGGAA CGCGTGAACT ATGAGATTTC CGAGACAGAA
AAGGAAATCG TGCGCGGCCC GGGTGCGATC AAGCGCCTCA CCGTCGCGGT GCTGATCAAT
GGTGTCACGA CTGAGACAGC AGAGGGTGAG GCCGCTTTCG AACCTCGCCC CGAAGAAGAG
CTCGAAGCGC TGCGTGAATT GATTTCCGCC GCTGTCGGCT TTGACGCAGA GCGCGGTGAC
GTGATCACGC TGAAGTCCAT GGATCTCCCC AACGTGGAGC CGCTGGGCAC AGAAGTCACA
TCCTCGGTTT TCGACAATCT CTACTTTGAC GTGATGTCGA TCATTCAGAT GGCTGCCTTG
GCAATCGTCG CTCTGATCCT CGGTCTCTTT GTGGTCCGTC CGATTCTCGC AGGCAATGGC
GCATCGGTTC AGGCGCTTCC CTCTCCGGAT GGTGTGGCCG CCGGAGGTTT GCCAGAGCTT
CCCGACATGA GCGGCGGCGA CGCTGGCTTC ATGACCAACC CCGACCTTGG CGCAAATATT
GCCCTGGATG GGGAAATCGA CGGCGGCGAC GGCGGGTTCC AGCCTCTGGG TGACCTGCCC
GGCATGGGCG ATGGCCTGGC AGGCTTTGGC GGCGGTGGCG GCGGGATGAG CGATGACCCC
GTGGATCGTC TGCGGTCCAT GATCGGCGAG CGCCAAGAAG AAACCGTGCA GATTCTTCGC
GGCTGGCTGG AAGAAAACAA CGAGGAGCGT GCGTGA
|
|---|
| Protein sequence | MQAGENAGAT EVNVQQIKNV WAGLDKRKRM MAIGATLAVI FTFFLMSLVA NKPSMQLLYA
GLESSSAGDV VSALEQSGVD YEVRGGSIYV PSSKRDELRM TLASQGLPAN GGKGYELLDS
LSGFGTTSQM FDAAYWRAKE GELARTIVAN PHVSQARVHI ANTGSNPFQR TIEPTASVSV
TPMGSPITPS QANAIRFLVA SAVAGLAVDN VAVIDANGAL IGSPEAAAAA GAGTDDRSQT
LRERVLRLVE ARVGQGNAVV EISVETITDT ESIREKRVDP QSRVAISTDV EERIDSSQNQ
AGEVTVASNI PDGDAGNGEG SKASTNATRE RVNYEISETE KEIVRGPGAI KRLTVAVLIN
GVTTETAEGE AAFEPRPEEE LEALRELISA AVGFDAERGD VITLKSMDLP NVEPLGTEVT
SSVFDNLYFD VMSIIQMAAL AIVALILGLF VVRPILAGNG ASVQALPSPD GVAAGGLPEL
PDMSGGDAGF MTNPDLGANI ALDGEIDGGD GGFQPLGDLP GMGDGLAGFG GGGGGMSDDP
VDRLRSMIGE RQEETVQILR GWLEENNEER A
|
|---|
| |