| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2923 |
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| Symbol | |
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| ID | 4078601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 3093742 |
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| End bp | 3094668 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638008252 |
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| Product | histone deacetylase superfamily protein |
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| Protein accession | YP_614917 |
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| Protein GI | 99082763 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.498273 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACCG CATTGCTCAC TCACGCGGAT TGCCTCACGC ATGAAACACC GCCGGGGCAC
CCTGAGCAGG TGGCGCGGCT GGAGCATGTG CTACATGCAC TCGCCGGGCT TGATCTTGTA
CGGGTGACCG CACCGTTGGC AGCCGAAGAC GATATCTTGC GCGCCCATCC CGCCACTTAC
CTTGCGGACC TGCGCCGCGC GTTGCCGACC GAGGGGCGTC GCGCGCTGGA TGCGGACACA
TGGATGTCGG CGGGATCTTT GGATGCTGCC TTCAGGGCCG TTGGCGCGGC CGTGCGTGCC
GTCGATATGG TGCTTGCGGG TGACGTGCAG AATGCGTTTT GCGCAACGCG CCCGCCGGGG
CATCACGCGG AGACAGACAC GCCCATGGGG TTTTGTCTGT TTGGAACAGC TGCGCTTGCG
GCCAAGCATG CGCTGGATCA TCACGGGCTC AAACGGGTCG CGGTGGTCGA TTTTGACGTC
CATCACGGAA ATGGCACACA GGATTTGCTG TGGGACGAGC GCCGCGCCTT GGTAATTAGC
TCCCATCAGA TGCCGCTCTG GCCCGGGAGC GGGAACTCGG ACGACGATGG TGCTTACGAC
AATGTGATGA ACCTGCCACT GCGCCCCGAA ACCGGCGGCG ATGAAATGCG GCAAATCTAT
CAAACGCAGG CCTTTGCACG CCTCAGAGCG TTCAAGCCCG AATTGATCAT CCTTTCGGCA
GGGTTTGACG CCCACCGTGA AGATCCATTG GCACAGCTCA ATTGGAAAAC CGATGATTTC
CGGTGGCTCA CGAGTGAACT GTGCCTGCTT GCACAAGAGT TGTGTCAGGG GCGTATCGTC
TCGACTTTGG AAGGCGGATA TGATCTGAAC GCGCTAGCCG ATGCCGCCAA GGCACATGTG
GAAGAATTGA TAAAGGCCGC GACATGA
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| Protein sequence | MATALLTHAD CLTHETPPGH PEQVARLEHV LHALAGLDLV RVTAPLAAED DILRAHPATY
LADLRRALPT EGRRALDADT WMSAGSLDAA FRAVGAAVRA VDMVLAGDVQ NAFCATRPPG
HHAETDTPMG FCLFGTAALA AKHALDHHGL KRVAVVDFDV HHGNGTQDLL WDERRALVIS
SHQMPLWPGS GNSDDDGAYD NVMNLPLRPE TGGDEMRQIY QTQAFARLRA FKPELIILSA
GFDAHREDPL AQLNWKTDDF RWLTSELCLL AQELCQGRIV STLEGGYDLN ALADAAKAHV
EELIKAAT
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