Gene TM1040_2879 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2879 
Symbol 
ID4076413 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp3050052 
End bp3050723 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content55% 
IMG OID638008208 
Productpeptide methionine sulfoxide reductase 
Protein accessionYP_614873 
Protein GI99082719 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0225] Peptide methionine sulfoxide reductase 
TIGRFAM ID[TIGR00401] methionine-S-sulfoxide reductase 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.667528 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGACGTC TGGACACACT CAAACATTTC ACATTGGCGG CGCTGATCAT CGTTGGCGTC 
CTGACCAAAG GCAGCGCGTT GCGCGCGCAA ACTCAGGACA CGCTCATTGT TGCAGGCGGA
TGCTTCTGGT GTGTCGAGAG CGATTTTGAA TCCGTGCGGG GCGTGTCAGA GGCGATTTCC
GGCTACACTG GTGGTACCAC TGAGAACCCG ACCTACAAAC AGATCGGCAG TGGGCGCACA
GGACATTACG AAGCAGTCAA AATCCTCTTC GATCCGACCA TCGTCAGCCG CGAGAGCCTT
TTGGACCTGT TTTTCCGATC CATTGATCCT ACGGATACAG GGGGTCAATT CTGCGATCGC
GGCGCCCCGT ATAGGACTGC TGTTTTTGTC TCTAACGAAG ACGAAAAGGC CATTGCACAA
GCCGTAAAAG CAGAGGCAGA GGCGGAGCTT GGGCAGCAGA TTGTAACGCC AATTCTTGAA
GCCTCGCCTT TCTATGAGGC CGAAGCCTAC CATCAGGACT ACTACAAGGG AGAGGGTCTG
GTTCTGACCC GTTTTGGACC CTTACGCCAG TCAAAGGCCT ATGTCCGCTA TCGCAAAGCC
TGTGGGCGCG ACGCGCGAAT TGCAGAGCTT TGGGGGCGCG ATGCGCCTTT CATTGGAAGC
TACGGGTTTT GA
 
Protein sequence
MGRLDTLKHF TLAALIIVGV LTKGSALRAQ TQDTLIVAGG CFWCVESDFE SVRGVSEAIS 
GYTGGTTENP TYKQIGSGRT GHYEAVKILF DPTIVSRESL LDLFFRSIDP TDTGGQFCDR
GAPYRTAVFV SNEDEKAIAQ AVKAEAEAEL GQQIVTPILE ASPFYEAEAY HQDYYKGEGL
VLTRFGPLRQ SKAYVRYRKA CGRDARIAEL WGRDAPFIGS YGF