| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2829 |
|---|
| Symbol | |
|---|
| ID | 4076648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2998674 |
|---|
| End bp | 2999771 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638008158 |
|---|
| Product | putative DNA-binding/iron metalloprotein/AP endonuclease |
|---|
| Protein accession | YP_614823 |
|---|
| Protein GI | 99082669 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0533] Metal-dependent proteases with possible chaperone activity |
|---|
| TIGRFAM ID | [TIGR00329] metallohydrolase, glycoprotease/Kae1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAGA CGCTCACACT TCTTGGACTG GAAAGCAGTT GCGACGACAC AGCAGCCGCC
GTTGTACGAC AGACGACAGG CGCCAAGGCG GAAATCCTGT CGTCGATCGT GTTCGGCCAG
ACCGAGCTTC ACAGCGCGTA TGGCGGCGTG GTGCCCGAGA TCGCCGCGCG CGCCCATGCT
GAAAAACTCG ACAGTTGCGT GCGCGACGCT CTCGCCGAGG CCGGCCTCAC CCTAGGCGAC
CTGGATGCCA TCGCCGTCAC CGCAGGCCCA GGGCTGATCG GGGGCGTGAT GTCTGGCGTG
ATGTGCGCAA AAGGGATCTC TGCTGCCACC GGACTGCCAC TGATCGGAGT GAATCACCTT
GCCGGGCATG CTCTGACGCC GCGCCTGACT GACGATATCA CCTATCCCTA CTTGATGCTG
CTGGTGTCAG GTGGCCATTG CCAATATCTG ATCGCACGCG GGCCAGAGAC GTTCTCGCGC
CTTGGCGGCA CAATAGACGA TGCACCCGGC GAAGCCTTTG ACAAGACCGC GCGACTTCTT
GGGTTGCCAC AACCCGGAGG ACCGTCTGTA CAGGCGGAGG CAGAGCATGG CGATCCGGAG
CGGTTCCGCT TTCCACGCCC TCTGCTTGAT CGCCCTGATT GCAACCTGTC TTTTTCGGGG
TTGAAAACCG CCTTGATGCG AATGCGGGAC CAGATCATCG CAGAAAAGGG AGGCCTGACA
CGTCAGGATC GCGCCGATCT CTGTGCTGGT TTTCAGGCGG CAATCGTTGA CACACTTGTG
GAAAAAACCC GTCGCGCCCT CCGGCTCTAT CTCGAGGATA AGCCCCAGCA CCCAACGTTG
GCCGTGGCCG GAGGTGTCGC TGCCAATACT GAAATCCGGA ACGGATTGAT GGCTCTATGC
TTTGAGTTAG AGACTGATTT TCTCGCACCC CCTTTGGCGC TTTGCACCGA TAACGCAGCG
ATGATCGCCT ATGCAGGACT GGAGCGCTAC AAAACCGGAG CGCGTGATGG CATGTCGCTT
TCGGCACGTC CGCGCTGGCC GCTGGATAAA ACCAGCCCAG CGCTGATCGG CAGCGGCAAG
AAAGGGGCCA AGGCATGA
|
|---|
| Protein sequence | MTQTLTLLGL ESSCDDTAAA VVRQTTGAKA EILSSIVFGQ TELHSAYGGV VPEIAARAHA
EKLDSCVRDA LAEAGLTLGD LDAIAVTAGP GLIGGVMSGV MCAKGISAAT GLPLIGVNHL
AGHALTPRLT DDITYPYLML LVSGGHCQYL IARGPETFSR LGGTIDDAPG EAFDKTARLL
GLPQPGGPSV QAEAEHGDPE RFRFPRPLLD RPDCNLSFSG LKTALMRMRD QIIAEKGGLT
RQDRADLCAG FQAAIVDTLV EKTRRALRLY LEDKPQHPTL AVAGGVAANT EIRNGLMALC
FELETDFLAP PLALCTDNAA MIAYAGLERY KTGARDGMSL SARPRWPLDK TSPALIGSGK
KGAKA
|
|---|
| |