| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2789 |
|---|
| Symbol | |
|---|
| ID | 4076557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2948817 |
|---|
| End bp | 2949971 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638008114 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_614783 |
|---|
| Protein GI | 99082629 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.201948 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCGC GCAAGGACAG ATTTCACCTC TCACCAGAGA CCCGCATCCT CACGCCCGAG
GTGGCAGGTC TGGCGGAATT GCTGCATGCG CTCCGCGAGG GCCAGTCCAT TCTTGCACAA
CCGGGTGCCG TCCCGATCCA AGCCCAAGCG GAACAGACGC AGTGGCTCTA CTGCAAAAGC
TCAGGCTCGA CGGGATACGC AAAAACCATT CGGCGCAGCC CCGAAAGTTG GATTCGAAGC
TTCGAGATGG ACCGAGAGCT TTTTGCGCTT GGCGCCAGGG ATACCTATGC AAGCCTTGGC
AACCTTTCGC ATTCGCTCAC GCTATTTGCG GCGGTTGCGG CGTGCCAAAT CGGTGCCGAC
CTCGCGATGC TGGGCGACTG CGGTCCGCGA GAACAGCTTA GTCGACTGGG CGAGTTCCAC
GCCTCGGTGC TCTATGCGAC GCCAGCGCAG TTGCGACTGC TGCGCCGCGC TGCGGGAAAA
CGTCAACTGG AAGGGCTGCG ATTGCTGTTT TCATCGGGTG GCAAGCTCGA CCACGAGACG
CGCGCCGGGC TTCAGCAGCT CTTTCCGGGC GCCCAGGTGA TTGAGATCTT CGGCGCCACC
GAAACAAGTT ATATGACCAT CGCAGGCCCG GACGCGCTCG AAGGGTCTGT GGGACAAGCC
TACCCTGGCG TTGAAATCAG GATCGACAGC CCTGATGCGA ATGGCGTGGG CGAAATCTGG
ATACGGAGTC CGTTTGTCTT TGATGGCTAT GTAAAAGGAG AGAGCCAAGA GACACGTTGG
AACAACGGGT GGCTCACCAT CGGAGAGATG GGACGGCTGG ACGAGTCGGG CAACCTCTTT
GCCAAGGGGC GCAAAAATCG CATGGTGACG GTGGCCGACA AGAACGTTTT TCCCGAGGAA
ATCGAAGCCG TCCTGATGAG CGTCCCCGAG GTCGAGATCG CCGTTGTCTG TGCAGTTCCG
GATGCGCTGC GCGGGCATGT GATCCATGCC GCGGTTCAAG GCGAGGCCAG TCCCGCTGCG
CTCCGGCAGC TTTGCCGCCA TCAAATCGGC GATCACGCCG TGCCTCGCAG CATACGCAGG
GTGGCGAAGA TCCCGATGCT GACGGCGGGC AAACCGGACC TGCAGGCCTT GCGCGATCTT
TGGGACGATC TGTGA
|
|---|
| Protein sequence | MTARKDRFHL SPETRILTPE VAGLAELLHA LREGQSILAQ PGAVPIQAQA EQTQWLYCKS
SGSTGYAKTI RRSPESWIRS FEMDRELFAL GARDTYASLG NLSHSLTLFA AVAACQIGAD
LAMLGDCGPR EQLSRLGEFH ASVLYATPAQ LRLLRRAAGK RQLEGLRLLF SSGGKLDHET
RAGLQQLFPG AQVIEIFGAT ETSYMTIAGP DALEGSVGQA YPGVEIRIDS PDANGVGEIW
IRSPFVFDGY VKGESQETRW NNGWLTIGEM GRLDESGNLF AKGRKNRMVT VADKNVFPEE
IEAVLMSVPE VEIAVVCAVP DALRGHVIHA AVQGEASPAA LRQLCRHQIG DHAVPRSIRR
VAKIPMLTAG KPDLQALRDL WDDL
|
|---|
| |