| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2788 |
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| Symbol | |
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| ID | 4076556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2947896 |
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| End bp | 2948753 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 638008113 |
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| Product | RpiR family transcriptional regulator |
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| Protein accession | YP_614782 |
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| Protein GI | 99082628 |
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| COG category | [K] Transcription |
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| COG ID | [COG1737] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.293627 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACGA TTGCCGAGAA ACTGAAATCA CGCGAATCTG ACCTGACGCG TGCGGAACGG
CAACTTTCGG CGGCGATCTT GGACAACTAT CCGATTCCCG GTCTTGGCAG CATCACAGAG
CTTGCGGAAC TGGCTGAGGT CTCGACGCCG ACCGTCGCGC GTATGGTGCA AAAACTGGGG
TTCTCTGGCT ATCCCGAATT TCAGCATGCC TTGCGCGAAG AATTGCGCGA AATCATCTCT
AACCCTGTGG AAAAAAGGGC AGAACAGGCG CCGGAGCTAC CAGAAGGCCA TATGCTTAAT
CGGTATGCTG TTGCGGTCTA TGACAATATT CGCGCCACGC TGGAAAATGT GAACCTCGAG
GAGTTCGACA CGCTCTGTGC GCTTCTCGCG GACACCAATA GTCGCGTACA TATTGCCGGC
GGGCGCCTGA GCGGAACGCT GGCACAGAAC TTTTATCTGC ACCTGCAGAT GATCCGAAGA
GATGTCTTCA TGATTCCGCC GCGCGCCTCC TGGACCCACT CGGTTCTGGA CCTGCTTCCG
GGCGATACGC TGATTCTCTT TGACATCCGA CGCTATGAGA ACGCGACCCT TCTTCTGGCT
GAGATGGCGC ATGAACGCGG CGTGAAAGTG GTTCTGTTTA CGGATCAGTG GCGCTCGCCA
ATTCAAAAAG AGGCAACATT CACCTTTGCC GCGCGCATCG CGGTGCCCTC GGCATGGGAT
TCAGGGGTCG CGCTTTTGTT GTTGATCGAA AGTATGATCG CCAAGATCCA AGAGGACCAT
TGGGACACCG TGAAGGCGCG CAATGACGAG CTCGAAGCCG CCTTCGACCG TACACGCCTG
TTTCGCAAAT TCACCTGA
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| Protein sequence | MPTIAEKLKS RESDLTRAER QLSAAILDNY PIPGLGSITE LAELAEVSTP TVARMVQKLG
FSGYPEFQHA LREELREIIS NPVEKRAEQA PELPEGHMLN RYAVAVYDNI RATLENVNLE
EFDTLCALLA DTNSRVHIAG GRLSGTLAQN FYLHLQMIRR DVFMIPPRAS WTHSVLDLLP
GDTLILFDIR RYENATLLLA EMAHERGVKV VLFTDQWRSP IQKEATFTFA ARIAVPSAWD
SGVALLLLIE SMIAKIQEDH WDTVKARNDE LEAAFDRTRL FRKFT
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