| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2749 |
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| Symbol | |
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| ID | 4077621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2896740 |
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| End bp | 2898026 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638008074 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_614743 |
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| Protein GI | 99082589 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000698233 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGTCG GCATCTGTTT TGTCGTGCTT CTCGCAGTTG GCATGCCCAT CGGCTTTGCC
ATTGGTCTTG CGGGTGTCAT CGGGATTTTC ACCATGGGGG GCGGCAGCAC GTTCCTTGCA
ATTGGACCAA GCAAGATCTT CAACGGGCTC AATATTTTCC CGTTCCTTGC GATGCCGTTC
TTTATCCTGG CGGGCGAGAT CATGAACAGC ACCGGGATCA CCGGACGATT GGTGAAGCTG
GCCGAGGTGC TTGTGGGCCG CTTTCGCGGT GGCCTTGCGC ATACCAACAT GCTGGCGTCG
GTCTTTTTTG CGGGTCTTAC CGGGTCTGCG ACTGCGGATG CGGCCGCCTT TGGCCGTACG
TTGGTGCCCG CGATGGTGAA ACAGGGCTAC AAACGCGATT ACGCCTGCGC GGTCACGGCT
GCCGGGTCAA TCATCGGGCC GACCATTCCT CCCTCCGGGC TGATGGTGGT CTATGGCTCC
TTGATGGGGG TCTCGATTGG CGGGTTGTTC GCAGCGGGAT TGCTGCCGGG CCTGGTGATC
TGTGCGGTCT GCATGGGCGT TATTGCCATT GGCGGCAAAC GCGAAAACCT GCCCAAAGCA
GCGCGTGGCG CAAGCTTGGG TGAAGTATGG CGCACCTTCC TGTCGTCGAT CACCGCGCTT
TTGATGCCGA TCATTATTCT CGGCGGTATT CTGGGCGGGA TCGTCACCCC TACCGAAGCA
GCCTCCATCG CCGTGGCCTA CGCCCTCTTT ATCGGCTTTT TCGTCTATCG CACGCTGACC
TTCCCGGATC TCTACGGGAT GCTGATCCGC ACCGCGCGCA TTACCGGGGT GATCTTCGTG
ATCATCGCCT TTGCGAGCAT CCTCGGCTGG TGGATGAGTT TTGAGCGCAT CCCGCAGGCC
ATCGCGGGCA GCGTGCTGGG CCTGTCGGAA AACCCCTATG CGGTGATCGC GATCATCATC
TGCATCCTCC TGGTGATCGG CATGGTGATG GACATCACCG CGATCCTGAT CATCCTCGGC
CCGGTGCTTG TGCCGCTCAC AGAGCAAATC GGACTGGAGC CAATCCACGC CGGGATCATC
TTTGTGCTAG CGCTCAACAT CTCCTTGATG ACGCCCCCCG TTGGGGCCTG CCTCTTCGTA
TTGTCGTCGG TGACAGGCGA AAAGCTCGAG CGGATTTCGG TGAAGCTTGC CCCCTTCTTA
ATCGCGGAAG TGATCATTCT CTTCCTCTTC GCATTCTGGG AGGACGCGGC TCTGTTGCTG
CCGCGTGCGC TCGGATTTGC CCCCTAA
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| Protein sequence | MIVGICFVVL LAVGMPIGFA IGLAGVIGIF TMGGGSTFLA IGPSKIFNGL NIFPFLAMPF
FILAGEIMNS TGITGRLVKL AEVLVGRFRG GLAHTNMLAS VFFAGLTGSA TADAAAFGRT
LVPAMVKQGY KRDYACAVTA AGSIIGPTIP PSGLMVVYGS LMGVSIGGLF AAGLLPGLVI
CAVCMGVIAI GGKRENLPKA ARGASLGEVW RTFLSSITAL LMPIIILGGI LGGIVTPTEA
ASIAVAYALF IGFFVYRTLT FPDLYGMLIR TARITGVIFV IIAFASILGW WMSFERIPQA
IAGSVLGLSE NPYAVIAIII CILLVIGMVM DITAILIILG PVLVPLTEQI GLEPIHAGII
FVLALNISLM TPPVGACLFV LSSVTGEKLE RISVKLAPFL IAEVIILFLF AFWEDAALLL
PRALGFAP
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