| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2739 |
|---|
| Symbol | |
|---|
| ID | 4077611 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2883772 |
|---|
| End bp | 2885655 |
|---|
| Gene Length | 1884 bp |
|---|
| Protein Length | 627 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638008064 |
|---|
| Product | Beta-N-acetylhexosaminidase |
|---|
| Protein accession | YP_614733 |
|---|
| Protein GI | 99082579 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3525] N-acetyl-beta-hexosaminidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATTTTC ACCTCGATAG CCTCTGGCAT GCCGAAGAAG GCGCGATGGA GTTCGCGCTG
ACCAATTGTG GCACAACCCC CGTGACCAAC CCGCGCCTCG TTTACGCAAC GCTCACGCGG
TGTTTGCGGC CTTCGAACTG CACCGGGGCA CGGCTTGTGC GGCGGCAGGC AAACTTTCAC
GAATACGCCT CGGACGAGGG ATTCGTGCTC GCACCGGGAG AGACTTGGCG GTTCACGGAG
CATAGCCTCA CCCGTCCGGC GCTTCATTCC AATGAGGGGC CAAAATCAGC GGGAGTCCTC
TTGGAGGATG ACACGCTCGT GCTGGCATTT GCCGGGGACT TGCAGGCCTC TGTGGTGGAA
GGTCACGCAA CAGCTGTGCA AAATGCGGCT CTAACATGCG GGATTCTGCC CGAACCCAAG
CGTGTCGCTA TCTCGAACTG GGCTGAGACC GCCCCTGTGC ATCTCGCGCT TCAGAGTGAT
GACGCAGCGG TGATGCAGTT GGTATCGCGC GTCTCTGAGC TGACTCGCCG TTTGCATCCG
CTTGCGCCGA CACCGTTTGT GTTGACCGCC AAGGAGGACG TGGCACTGCT CTGCATTACG
CCGGATCAGA CACTCCCCGC AGATGGCTAT CGTATCACTT GGGACGAAGG GAAAACCACC
CTGCATCACG GCAGCGGGCG GGGGCTGTTT TACGGTCTGG TGTCGCTGGC GCAGATGCTC
ACCCATGCCC ACGCTGAGCC TCAGCGCTAT GGCGTGCCGC TCAGCGGAGA GATCGAGGAC
GCCCCCCGCC ACGGTTGGCG CGGTGCGCAT CTGGATGTCT CGCGCCAGTT TTACCCGCTC
GATCAGGTTC TGCGCTACGT GGACATCATG GCGTGGCACA AGATGAACCG GTTCCATTGG
CACCTGACTG ACGATGAAGG CTGGCGGCTG GAGATCAAAG CCTATCCGCA GCTCACTGAG
ACCGCCGCAC ATACCGGCAT GGACCTGCCC GTCTTGCCGC AGCTTGGCCC AGACATGACC
GGGCAGAGCG GTTTTTACAC CCAGGACGAG GCCCGTCAGG TGGTGAAACA CGCCGCGCAG
TTCGGCATCG AAGTAATGCC GGAGATCGAC GTGCCCGGTC ACTGTGCTTG CGTTCTGGGC
GCGTTGCCTG ATCTGGTCGA TCCCGAAGAG CCCGAGAGCT ACTGGTCGGT GCAGGGGTTT
GCCAACAACG CGCTCAACCC GGCGATCGAG GAGTCTTATA CCTTTGCCGA GACCGTTTTG
GCCGAGGTCT GCGAGATCTT CCCGTTTGAG GTCGTTCATG TGGGGGGCGA TGAGGTGGCC
GAGGGCGCTT GGATGCAATC GCCCAAAGCG CAGGCGATGA TGCGCGAAAC GGGTCTAAAG
GACACGCCGC AATTGCAGGC TTATTTCCTG CGTCACATCC AGACCTATCT GGCGGGGCTT
GGTCGCAAGC TTGGCGGTTG GGAAGAGGTG GCCCATGGCG GTGGTCTTGA TCCCGAGCAC
AGCCTTTTGT TTGCCTGGAC CACAATCGAG AAAACCGCGG AGCTGGCGCA AGAAGGCTAT
GACGTCATCA GCACGCCTGG GCAGGCCTAC TACCTTGATA TGGCGCTGTC GGATGCGTGG
TATGCACCGG GCGCCAGCTG GGCGGGTTTC ACCCCGCTCG ACAAGACTTA TGCGTTTGAG
GCCGACAATG GCGACCCAGT GCTTCAGGGG CGGCTCAAAG GTGTGCAGGC CTGCGTCTGG
AGTGAGCATC TGACCACAAT GGCCCGGCGC AATCACATGA TCTTTCCGCG CCTCAGCGCC
ATTGCAGAGG CCGGGTGGAG CGCAGCCGAA AACAAAGCCT ATGACCGGTT CAAGTCGCTT
GCAGAGTTGA TGCCGCGCCT CTGA
|
|---|
| Protein sequence | MHFHLDSLWH AEEGAMEFAL TNCGTTPVTN PRLVYATLTR CLRPSNCTGA RLVRRQANFH
EYASDEGFVL APGETWRFTE HSLTRPALHS NEGPKSAGVL LEDDTLVLAF AGDLQASVVE
GHATAVQNAA LTCGILPEPK RVAISNWAET APVHLALQSD DAAVMQLVSR VSELTRRLHP
LAPTPFVLTA KEDVALLCIT PDQTLPADGY RITWDEGKTT LHHGSGRGLF YGLVSLAQML
THAHAEPQRY GVPLSGEIED APRHGWRGAH LDVSRQFYPL DQVLRYVDIM AWHKMNRFHW
HLTDDEGWRL EIKAYPQLTE TAAHTGMDLP VLPQLGPDMT GQSGFYTQDE ARQVVKHAAQ
FGIEVMPEID VPGHCACVLG ALPDLVDPEE PESYWSVQGF ANNALNPAIE ESYTFAETVL
AEVCEIFPFE VVHVGGDEVA EGAWMQSPKA QAMMRETGLK DTPQLQAYFL RHIQTYLAGL
GRKLGGWEEV AHGGGLDPEH SLLFAWTTIE KTAELAQEGY DVISTPGQAY YLDMALSDAW
YAPGASWAGF TPLDKTYAFE ADNGDPVLQG RLKGVQACVW SEHLTTMARR NHMIFPRLSA
IAEAGWSAAE NKAYDRFKSL AELMPRL
|
|---|
| |