| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2714 |
|---|
| Symbol | |
|---|
| ID | 4077021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2859216 |
|---|
| End bp | 2859830 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638008039 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_614708 |
|---|
| Protein GI | 99082554 |
|---|
| COG category | [K] Transcription
[S] Function unknown |
|---|
| COG ID | [COG1396] Predicted transcriptional regulators
[COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGTG AGAAGCCATC AACAGAGCCC AATGTCGGTC CCGCGATCCG CAAGCGTCGC
AAGCAGCTGA AGCTGACCTT GCAGGCGCTC TCGGATCGGT CCGGTGTTTC GGTCGGCTAT
CTGAGTCAGG TGGAGCGCGA CAATGCGACC CCCTCGCTTG GGACATTGGC GCAGATTTCT
GCGGCGCTGG ATGTGGGGCT GGATTACTTC ATCTCGGCCT CCAAACCCTC GGATGGGCTG
ACACGGTCCG GTAGCCGCCC GCTCTTTGCC CTAGATGATT CCTCGCTGCG CTACGAGGCA
CTGGGCGCGG ATTTTCCGGG GTCCGAGATG TCCGCTTACA TCCTGCACAT TCCGCCCGGT
TATGTGTCTG AAACGGTACA TCACGAAGGG GAGGAGATCA TCTTTATCCT CGAGGGTGAA
ATCCAGCAGA CCCTTGGCGG GCAGACCTTT TCCATGATGC CGGGCGACAG TCTGCATTAC
AGCGGCGACA CCCCCCATGC CTGGAGCAAT CCGACCGATC AGAACGCCCG AATCCTCTGG
ACCGGGACTC TGACCGTTCT CAACCGCAAA GGCGCCATCG AGCTTCCGGA GCTGTCCCAC
AAGCAGAGCA CGTAA
|
|---|
| Protein sequence | MQREKPSTEP NVGPAIRKRR KQLKLTLQAL SDRSGVSVGY LSQVERDNAT PSLGTLAQIS
AALDVGLDYF ISASKPSDGL TRSGSRPLFA LDDSSLRYEA LGADFPGSEM SAYILHIPPG
YVSETVHHEG EEIIFILEGE IQQTLGGQTF SMMPGDSLHY SGDTPHAWSN PTDQNARILW
TGTLTVLNRK GAIELPELSH KQST
|
|---|
| |