Gene TM1040_2714 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2714 
Symbol 
ID4077021 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2859216 
End bp2859830 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content60% 
IMG OID638008039 
ProductXRE family transcriptional regulator 
Protein accessionYP_614708 
Protein GI99082554 
COG category[K] Transcription
[S] Function unknown 
COG ID[COG1396] Predicted transcriptional regulators
[COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCGTG AGAAGCCATC AACAGAGCCC AATGTCGGTC CCGCGATCCG CAAGCGTCGC 
AAGCAGCTGA AGCTGACCTT GCAGGCGCTC TCGGATCGGT CCGGTGTTTC GGTCGGCTAT
CTGAGTCAGG TGGAGCGCGA CAATGCGACC CCCTCGCTTG GGACATTGGC GCAGATTTCT
GCGGCGCTGG ATGTGGGGCT GGATTACTTC ATCTCGGCCT CCAAACCCTC GGATGGGCTG
ACACGGTCCG GTAGCCGCCC GCTCTTTGCC CTAGATGATT CCTCGCTGCG CTACGAGGCA
CTGGGCGCGG ATTTTCCGGG GTCCGAGATG TCCGCTTACA TCCTGCACAT TCCGCCCGGT
TATGTGTCTG AAACGGTACA TCACGAAGGG GAGGAGATCA TCTTTATCCT CGAGGGTGAA
ATCCAGCAGA CCCTTGGCGG GCAGACCTTT TCCATGATGC CGGGCGACAG TCTGCATTAC
AGCGGCGACA CCCCCCATGC CTGGAGCAAT CCGACCGATC AGAACGCCCG AATCCTCTGG
ACCGGGACTC TGACCGTTCT CAACCGCAAA GGCGCCATCG AGCTTCCGGA GCTGTCCCAC
AAGCAGAGCA CGTAA
 
Protein sequence
MQREKPSTEP NVGPAIRKRR KQLKLTLQAL SDRSGVSVGY LSQVERDNAT PSLGTLAQIS 
AALDVGLDYF ISASKPSDGL TRSGSRPLFA LDDSSLRYEA LGADFPGSEM SAYILHIPPG
YVSETVHHEG EEIIFILEGE IQQTLGGQTF SMMPGDSLHY SGDTPHAWSN PTDQNARILW
TGTLTVLNRK GAIELPELSH KQST