| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2684 |
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| Symbol | |
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| ID | 4077595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2822202 |
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| End bp | 2824085 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638008009 |
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| Product | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like |
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| Protein accession | YP_614678 |
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| Protein GI | 99082524 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00440045 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.764263 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTTCC TGCGTCTTTT GTCCCGCAAC CGCCTCGCGC TGGCGGGGCT CATCGTGATG
TCGGTGGTGC TGCTGCTGGC GGTGCTGACA CCCATTTTGC CGCTGCCCGA CCCGGATGTG
ACCAACACTG CAGAGCGGTT CAAGAAACCC TTTAGCGAGG GGGCCTTGCT GGGCACTGAC
CACCTTGGTC GGGATCTCGC CAGCCGCCTG ATGTGGGGCA CGCGGCTGTC GCTGGCAGTG
GGCTTTGCGG CAGCGGTGGC GGCGGCCACC ATCGGGGCGG CCATCGGCGT GATCGCCGGT
TTTTATGGCG GGCGCGTGGA CAATGTGATC ATGCGCGGCG TCGATATGCT GATGGGCTTT
CCCTATATCC TCCTGGCGCT GGCGATTGTC GCAGCACTTG GTCCGGGGCT GATGAATGCG
CTGATCGCTG TGGCCGCCGT CAACATTCCC TTCTTCGCGC GCAACATTCG CGGTGTCACC
GTCGGCATTG CGCACAAGGA ATTTATTGAT GCGGCGCGGC TGTGCGGGAT GTCGAATGCG
CGCATTATCA TCACCGAGGT GGTGCCAAAC GTGATCCCGG TGATCGTGAT CGCCATGTCC
ACCACTGTCG GCTGGATGAT CCTCGAGACG GCAGGTCTCA GTTTCCTTGG CCTTGGTTCG
CAACCGCCGC AGGCGGATCT GGGCTCCATG CTGGGGGAGG CACGCTCGGC GCTGATTACC
AATCCGCATA CCTCCGTGGT GCCCGGTGCG ATGATCCTCG TGATCGTGAT GGCGATCAAC
CTTCTGGGCG ACGGCGTGCG CGACGCGCTT GATCCGCGCC TGAAATCCGG CGCGCTCAGC
CGCCCGATGC CGACCACCAT GGTGCGCCGC ACAGACCCCG TACCGCAGCC CGAAGGCGAC
GGTATCCTGA GCCTTTGCAA CCTGCAAACC CAGTTCCACA TCAAGGATCG CATCTACAAG
GCCGTGGGCG GCGTGGATCT CTCGGTAAGG CCGGGCGAAT GCCTTGGGAT CATTGGTGAA
AGTGGCTCTG GTAAATCCGT GACGGCGCTG TCGATCATGG GGCTGGTGGC CTCGCCCCCC
GGTGTCATCA CCGGCGGTGC AGTGCATTAC AAGGGCGAGG ATCTGATCGG TGCGCCCTAT
GAGACCCTGC GCCGTCTGCG CGGTGACCGC GTGGCCTATA TCTTTCAGGA TCCTCTGGCG
ACGCTGCACC CGCTCTATAC GGTTGGCGCG CAGCTCATCG AGGCGATCCA GAGCCATCAT
CGCACCAGCA CCTCCGAGGC GCGTGCCCGC GCGATTGAGC TTTTGAAATC CGTGCGCATC
CCCAATGCCG AGGCGCGCGT GGACAATTAC CCGCATGAGA TGTCGGGCGG CATGCGCCAG
CGGGTCGGCA TCGCCATGGC GCTGGCCAAC GACCCTGAGG TCATCATCGC GGATGAGCCC
ACAACCGCGC TGGATGTGAC GGTGCAGGCG CAGATCCTTG CGCTCCTGGA TGACTTGCGG
CGCGAGCGGG GCTTGGCGAT CATCTTCATC ACCCATGATT TTGGCGTGGT GGCGCAGCTC
TGTGATCGGG TGGCGGTGAT GTATGCGGGC CGCATTGTCG AGGAAGGCCC CACCGATGCC
ATTCTCAATG CGCCTGCTCA CCCCTATACC GCGCGGCTGA TGGCCTGCGT GCCGGAACTG
GGCCAGGGCA GGCGCGAGCT TGCGGCCATT CCCGGTCTAC CGCCTGTGGT GGACAAACTG
CCCGCGGGGT GCGCCTTTGC GGATCGCTGC CCCAAGGCCG CCAAAGCCTG CCGCAGCGGG
GACATTGCGC TCGATGGGTT TGGTGCGGGG CGCAAGATCC GCTGTATAGA CCCTGAAATT
CCAGTGCAGG AGGCCACGGC ATGA
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| Protein sequence | MSFLRLLSRN RLALAGLIVM SVVLLLAVLT PILPLPDPDV TNTAERFKKP FSEGALLGTD
HLGRDLASRL MWGTRLSLAV GFAAAVAAAT IGAAIGVIAG FYGGRVDNVI MRGVDMLMGF
PYILLALAIV AALGPGLMNA LIAVAAVNIP FFARNIRGVT VGIAHKEFID AARLCGMSNA
RIIITEVVPN VIPVIVIAMS TTVGWMILET AGLSFLGLGS QPPQADLGSM LGEARSALIT
NPHTSVVPGA MILVIVMAIN LLGDGVRDAL DPRLKSGALS RPMPTTMVRR TDPVPQPEGD
GILSLCNLQT QFHIKDRIYK AVGGVDLSVR PGECLGIIGE SGSGKSVTAL SIMGLVASPP
GVITGGAVHY KGEDLIGAPY ETLRRLRGDR VAYIFQDPLA TLHPLYTVGA QLIEAIQSHH
RTSTSEARAR AIELLKSVRI PNAEARVDNY PHEMSGGMRQ RVGIAMALAN DPEVIIADEP
TTALDVTVQA QILALLDDLR RERGLAIIFI THDFGVVAQL CDRVAVMYAG RIVEEGPTDA
ILNAPAHPYT ARLMACVPEL GQGRRELAAI PGLPPVVDKL PAGCAFADRC PKAAKACRSG
DIALDGFGAG RKIRCIDPEI PVQEATA
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