| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2678 |
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| Symbol | |
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| ID | 4077589 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2814095 |
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| End bp | 2817148 |
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| Gene Length | 3054 bp |
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| Protein Length | 1017 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638008002 |
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| Product | cyclic nucleotide-binding protein |
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| Protein accession | YP_614672 |
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| Protein GI | 99082518 |
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| COG category | [T] Signal transduction mechanisms
[V] Defense mechanisms |
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| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
[COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0916435 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAGCCGA GCCTATTTTC CTTTATCTGG CGCTATTCGA AACGGCAGCA GTTTGGCCTC
CTGCTGCTGA CCCTGATGAC GTTTCCCTTT CTTTACGCGA CCTTGGAACT GCCCAAGCGG
ATCATCAACG ATGCCATCGG CGCGCCGAGC GCCTGGATCG ACCTCTGGGG CTGGCGGCTG
AGCGCGCAGC AGTATCTCCT GGTGCTCTGC TTTGCGTTTC TGGGTGCTGT GCTGGCGTCG
GGAATGATGA AGATGCGGCT CAACACGCTC AAGGGCATCC TTTCCGAGCG TCTCCTGCGC
CGCCTGCGCT ATCAGATGAT CGCGCGGATG ATGCGCTTCC CGACCAACCA TTTCCGCACC
ACCAGCCAGG GTGAGATGGT CTCGCTCATC ACCTCCGAAT CAGAACCGAT GGGCGGCCTG
ATGGGCGATG CCGTGGCGCA GCCGGTGTTT CAGGCGGGGC AGATGCTCAC GATCGTCTCG
TTCCTGTTCA TCCAGAGCGT CTGGTTCGGG CTCGCGTCGG TGGCGCTCAT TCCGCTGCAG
GCCTGGCTTA TTCCGATGCT GCAGCGCCAG ATCAACCTGT TGAACAAGGA CCGCATCGCC
GAGGTGCGCG CGCTGTCTGC CGAGATCGGC GAAACGGCCG CCGGGCTGCA GGATTTGCGC
AGCAATGGTG GCTGGCGCTA CCGGCTGGCG CAGGTCTCCG ATCGCCTCGG GCGGCTCTTT
GAAATCCGCC GCCGGATCTA CATGAAAAAG TTCTTCATGA AGTTCCTCAA CAACCTGATC
GGCCATCTGA CCCCGTTTTT CTTTTATTCG GTGGGGGGCG TGCTGGCGCT GCGCGGTGAG
ATCACCGTGG GGGCCTTGGT GGCCGCGCTT GCGGCCTACA AGGACCTCTC GGCGCCGTGG
AAAGAACTGC TGACCTATTA CAACCAGGTG CAGGATATGT CCCTGCGCTG GCAGATCATG
ACCGAGAAAT TCTCGCCTCC CGGCATGATC GACCCGGCGC TTTTTGAGGG GGTACCGCAA
AAGGTGCCAC ATCTGCGCGG TGACATCGAG CTGCGCGACG TGACCGTGCG CGATGCAGAG
GGCAAGCCGG TGCTCGATGG GCTGACGCTC ACCATTCCCG CAGGGGCCCA GGTCGCGATC
CAAAGCAGTT CTGCCGCCGA ACGTCAGGCC CTGGCGCAAC TTTTGACCCG CGAGGTGCTG
CCCACGCGCG GCGAGGTGAT CGTGGCGGGC CATCCGCTTG CGGAACTGCA TCAGGGCGTC
ATTGCGAGCC GCATCGGCTA TGCGTTCAAC GCGCCCTATC TCTTTGACGG CACGCTTGGC
GATAATGTCT TGATGCCGCT GCGCAACCAG CCTCGCGCCA CCGCGGCAGA ACGGCAGCTC
TTGCAACGGG CCGAGGCGCT CAAGGCGGGC AATAGTGGCG ATCCGGTGAA TGCGGATTGG
GTCAACCCCG ATCTTGCCGG GCTGCGTTCG GAACATGATC TGCGGGACTG GTGGTTCCAA
CTCGTCGAGG CGATGGGCAT CGACGGCCAG CTCTTTCACC GCACGCTGCA TGCGCGTCTG
CAGGATCGCC ACCGCGCGCT TGAGGCGCAG ATCACCGCGC TGCGCCCACG CATTGCCGAA
CGACTGGAGG CGCAGGGCCT GCGCGACGTG GTCTATCGTT TTCTGCCCGA TCTCTATAAT
CCAGCCCTGC CCCTGGCAGA AAACATGATG TTCGCCTTCC CGGTGGAGCC AGTGCCCCCA
ACGCTCTTTA CCGATCCTGA TGGCCCCTTC CAGCGGGTCT TGCGCGCCGA AGGGCTGGAG
TCCCAGACCC GCGACATCAG CCTCGCGCTG ATCGACACGT TGCAACGCAC CTTTGGGCGC
GGCCAGACCT CGCACCCGTT GTTTCGCCGC CTGAACCTCG ACGAAGAGCT CTATGCGCGG
ATCGTCAAAG CAGCCGACCG CTATCGCGAG GGCCGGGTGC TGGACGGCAC CGACCGGGCG
CTGTTGTGTA CCCTGCCGTT CCTGCTCACC GAAGAGCAGC TCGGGGCGGG CCTGCCGCGC
GATTACAAGC TGCGCATCCT TGGAATCCGC AACCGTCGCG GCGATCTGTT GCTCGCCGAT
TGCGGCGGTG TCTACCGGCG TCTGCGGGCC GGGGAATATG CCCGCAAGCT CACGGTGCTG
GAGAACGCGC TCTTTGGCCG GATCTCGATC CATGCGGGCG GCAAGGCTCA AGCGGTCGAG
GACGTTGTGG CCGATGTGAT GGCCGATAAC GACCTGAAAG CACGGTTGGC GCTGATGATC
TACGATCTGC CCACCGGGCT TGGCGGTGCG CTGCTGGAGC CGGTGTTCCG CGAACGCGCC
GCCTTCACCC GCGCGGCGAT CAAGCGGCCG GATATCTTGA TCCTCGATCA TGTGCTGGCG
AGCCACGACT CGGACAACCG GCTGAAAACC CGCAACCGGC TGCAGGCTCT CTTGCCCAAG
ACCACCATGA TCCACCTCGA GGATCATTTT GAACATCCCT CGCGCTATGA TCTTCACCTC
ACGCTCCGGG ACGGGCGGAT CGACGGGCAA AGCGGCGTGG CGACCGTGCT TCTGGACGCG
CCCGAAGAGG CAGAGGATGA TTTTGACCGC AAGCTGTCCG AGATCGGGTC GGCGGATCTC
TTTGCCCGTC TGGATGCCCG CCATCGCCGT CTTCTGGCGT TTTCGGCCTC TTGGGTGCGC
GTGCCGACCG GCGCGGCGGT GTTTCGCGCG GGCGAAGCGG GGGATGCGGT CTATCTGTGT
CTTTCGGGGC AGGCGGAGCT GCAATTCCCC GAGGATGGCA GCGCGCTCGA TATGATCGCG
CCCGGACGGC TGATCGGGGA TCTGGCTGTG ATTACCGCCG CGCCGCGCCA GCTCGATCTG
TTTGCGGTGG AGGATTGCGT CTTTCTGCGT ATCGGGGCCG AGGAGTTCCG CACCGTAATC
GAGAGCGACA TCACCGTGGC GCTGCACCTG TTGCAGACCG TCTCTGGCCA TCTCTCGAGC
GCGGCGGTCG CGCTGCAGGA CGCCCGCTCA GCTCAGGGCA GCGCCGAGCC CTGA
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| Protein sequence | MEPSLFSFIW RYSKRQQFGL LLLTLMTFPF LYATLELPKR IINDAIGAPS AWIDLWGWRL
SAQQYLLVLC FAFLGAVLAS GMMKMRLNTL KGILSERLLR RLRYQMIARM MRFPTNHFRT
TSQGEMVSLI TSESEPMGGL MGDAVAQPVF QAGQMLTIVS FLFIQSVWFG LASVALIPLQ
AWLIPMLQRQ INLLNKDRIA EVRALSAEIG ETAAGLQDLR SNGGWRYRLA QVSDRLGRLF
EIRRRIYMKK FFMKFLNNLI GHLTPFFFYS VGGVLALRGE ITVGALVAAL AAYKDLSAPW
KELLTYYNQV QDMSLRWQIM TEKFSPPGMI DPALFEGVPQ KVPHLRGDIE LRDVTVRDAE
GKPVLDGLTL TIPAGAQVAI QSSSAAERQA LAQLLTREVL PTRGEVIVAG HPLAELHQGV
IASRIGYAFN APYLFDGTLG DNVLMPLRNQ PRATAAERQL LQRAEALKAG NSGDPVNADW
VNPDLAGLRS EHDLRDWWFQ LVEAMGIDGQ LFHRTLHARL QDRHRALEAQ ITALRPRIAE
RLEAQGLRDV VYRFLPDLYN PALPLAENMM FAFPVEPVPP TLFTDPDGPF QRVLRAEGLE
SQTRDISLAL IDTLQRTFGR GQTSHPLFRR LNLDEELYAR IVKAADRYRE GRVLDGTDRA
LLCTLPFLLT EEQLGAGLPR DYKLRILGIR NRRGDLLLAD CGGVYRRLRA GEYARKLTVL
ENALFGRISI HAGGKAQAVE DVVADVMADN DLKARLALMI YDLPTGLGGA LLEPVFRERA
AFTRAAIKRP DILILDHVLA SHDSDNRLKT RNRLQALLPK TTMIHLEDHF EHPSRYDLHL
TLRDGRIDGQ SGVATVLLDA PEEAEDDFDR KLSEIGSADL FARLDARHRR LLAFSASWVR
VPTGAAVFRA GEAGDAVYLC LSGQAELQFP EDGSALDMIA PGRLIGDLAV ITAAPRQLDL
FAVEDCVFLR IGAEEFRTVI ESDITVALHL LQTVSGHLSS AAVALQDARS AQGSAEP
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