| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2647 |
|---|
| Symbol | |
|---|
| ID | 4077950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2781272 |
|---|
| End bp | 2782768 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638007971 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_614641 |
|---|
| Protein GI | 99082487 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.835336 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGACAT CACCATTTCA AAAGGTTTAT GTGATGTCGC AGATCCATCG AGACGAGCTG
CTTTTCTGGT TCGGACTTGG CGAGGAAGAT CGTTCTTCTA TTGTCGGTAT GGCGCCCCTC
GTGGAGCGCC ACATTGATGC TGTTCTCGAC GATTTCTACG ACCTCTGCCT GTCGCGGCCG
GAAACCAAAG GGTATTTTCC GACCGAACAG ATCGTGGCCC ATGCCAAGGC TGCGCAGCGC
GCCCATTGGG TGAAGCTCTT TTCGGGACGT TTTGACGACA GCTACATGAG CTCTGCCGAC
AAGGTTGGAC GGGTGCATTT TGAGGTTGAT CTGCCGTTTC ACCTGTTTCT GGGCGGCTAT
GCCACGGTGG GCGACCGTAT CCTCAAGGTG GTCCTGACGC AGAAAAACGG CTGGCGCGGC
ACCAAGGCAA GGATGAAACA GGCGCGCGCG CTGCAGCGGC TCATTCTGTT TGATTGCGAG
CGGGTGATCG CAGGGTATAT CGACGCGCAG CTGCAGGAAC GTGAAAAGGC GCTCACGGTC
ATGACCCAGG GGATTCAGCG ATTGGAATCC GGGGATCTGA CCACCGAGAT GCCGTCGGGC
GACAAGGGCG GCTTGCCGGA GCGCTATGAC AATGTGCGTC TGTCGTACAA TCACCTGTTG
CGCCACTGGT CGGGGATCCT GTCGGATGCC ACCCGGCGCG CGCATTCGGT GGATGCCAAG
ATGGCCGAAA CAGCGCGTAT GACCCGCGAG ATGGCGCATC GCTCGGGCGA ACAGGCCAGC
ACCCTGAACG AGACTGTGAC GTCTGTGAAC AGCATGACCT GCAGCACACG ACTAACCAGC
GAGAAGGTCA ACGATGCGGC CAAGCAGATC GAGGCCAACC GACTTGTGGC CGAGGAGGGC
GGCGCGGTTG TGCGCGATGC GATTACGGCG GTCGAACGGA TCGAACAATC CTCCAGCCAG
ATCAACAAGA TCGTTGATGT GATTGATGAA ATCAGCTTTC AGACCACATT GCTTGCGCTC
AATGCCGGGG TGGAGGCCGC GCGCGCGGGC GAAGCTGGCA AAGGCTTTGC CGTCGTGGCA
TCGGAGGTGC GCGCGCTTGC AAGCCGGGCC ACGGATGCGG CGGATGATAT CAAGAAACTG
ATTGCCACCA GCTCTGATCA GGTCCTCGAG GGGTGTCAAT TGGTGCATCA GACCGGGGAG
CGGCTCGACA GCATCCGATC AAGCGCGGAC AACGTGGCGC GGATCATGCA AGAGGTCGAC
GGTGTGATCT TTGAGCAGAC CGGCCAGCTT GAAAACATCA GCGAACGGAT GGAGCGGCTG
GATCGATACA CGCAGGACAG CGCCGATCAG GCCAATGAGG TCTCCAGCAC GGCGGATGCG
CTGGCGCAGG ACTCGGCGGC GCTGAAGGCC AGCATGGACG GGTTCAAAAC CGGCGATATT
GCGTTGCGAG AGGCGGCGCA GGATAAGGAG TTCGAACGTC TCGCCAATCG CGGCTAG
|
|---|
| Protein sequence | MVTSPFQKVY VMSQIHRDEL LFWFGLGEED RSSIVGMAPL VERHIDAVLD DFYDLCLSRP
ETKGYFPTEQ IVAHAKAAQR AHWVKLFSGR FDDSYMSSAD KVGRVHFEVD LPFHLFLGGY
ATVGDRILKV VLTQKNGWRG TKARMKQARA LQRLILFDCE RVIAGYIDAQ LQEREKALTV
MTQGIQRLES GDLTTEMPSG DKGGLPERYD NVRLSYNHLL RHWSGILSDA TRRAHSVDAK
MAETARMTRE MAHRSGEQAS TLNETVTSVN SMTCSTRLTS EKVNDAAKQI EANRLVAEEG
GAVVRDAITA VERIEQSSSQ INKIVDVIDE ISFQTTLLAL NAGVEAARAG EAGKGFAVVA
SEVRALASRA TDAADDIKKL IATSSDQVLE GCQLVHQTGE RLDSIRSSAD NVARIMQEVD
GVIFEQTGQL ENISERMERL DRYTQDSADQ ANEVSSTADA LAQDSAALKA SMDGFKTGDI
ALREAAQDKE FERLANRG
|
|---|
| |