Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2628 |
Symbol | |
ID | 4077931 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 2761148 |
End bp | 2763355 |
Gene Length | 2208 bp |
Protein Length | 735 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638007952 |
Product | penicillin-binding protein 1A |
Protein accession | YP_614622 |
Protein GI | 99082468 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCAGG GGCGCAATTC TGGGCGCGGC ACTGGACGCG GGCGTGGCCC GCTGGTTGCA GAGAAACGCA ATTTGGGCGG CAATCAGCGT AAACCGGCCA AAAAAGCGCC AAGGAAGCGC GCCCCACAAA AGGCCAAACG CGGCTGGAGC CTGTTTGGAC GGCGCAAGAC CGCGCGCCCG CAGCGCAGAC GTGGACTCCT GGGCTGGCTG TTGCTGCCTT TTCAGATCGT GGCACGGGTG ATCTGGGCGG TGAGCTGGCG CATGGGGGTT GTCGGCGGTC TCTTTCTGGC CGGGGCGGTC GCCTTTCACT ACACCAAGCT GCCCGAGTAT CAGGCGCTGC TGGATGGGCG GCATCAGGGC TCGGTGACGC TGCTCGATCG CAACGGCAAG ACATTTGCAT GGCGCGGCGA TCAGTTTGGC GGCGTGGTTA CGGCGGATAC CGTCTCGCCG CATCTGAAGA ACGCGATCGT CGCCACCGAG GACAAACGGT TTTACCGCCA TTTCGGGATT TCGCCGCGCG GCATCGCCAG CGCGGTGCGC ATCAACCTCA GCGAAGGGCG TGGCCCGCTG TCGGGGCATG GGGGCTCTAC GATCACCCAG CAGACCGCCA AGCTGATGTG CCTTGGGGTG GAATATGATC CCGACATCTG GGAGAGCGAA GCCGCCTATG AGAGCGACTG CCGCCAGTCG TCGCTCTGGC GCAAGGGGAA GGAAGCGATC TTTGCCCTCG CGATGGAGGT GAAATACACC AAGAACGAGA TCCTCTCCAT CTATATGAAC CGCGCCTATA TGGGCGGTGG GGCACATGGG GTGGAGGCCG CTGCGCAGCG CTATTTCGGC AAATCCGCAA ATCAGGTGAA CCCGCCGGAG GCGGCGATGC TGGCGGGGCT CTTGACCGCG CCGTCGACGC TGGCGCCCAC CAACAATATC GAACGCTCAC GCAATCGCGC GGCCACTGTG CTGCGGCTGA TGGAAGAACA GGGCTACCTC AGCCCCAAGG AACGCCAGAT GGCCGCCGCC AATCCCGCGG AGCTGAGCGA GGCGGCGGCA GCGCGCGCGG GGGGCTATTT TGCCGATTGG ATCATGGACA CGGTGCCGTC CTTTCTGGGC GATCAGACCA CCGAAGATGT GGTGATCCGC ACCACGCTTG ATCAACGGCT GCAACAGGCC GCCGAGGATG CGGTGAACTA TGTGTTTGAA AACAAGGTGC GTGCAGGCTC CAAGGCGCAG ACCGCTGTGG TCGTGATGAG CGCCGATGGC GCGGTGCGGG CCATGGTGGG CGGGCGCAAG GTGCGTGCCT CGGGTGTGTT CAACCGCGCC ACGCAGGCCA AGCGCCAGAC CGGTTCGGCG TTCAAACCCT TTGTCTATGC CGCCGCGCTG GAGCTTGGCT ATTCGCCCTA TGACCGGGTG CTGGATGCGG AATATTGTCT CGATATTCCC GGCTCCGGCC CGTGGTGCCC ACAGAACTAC ACTCGCAAGT TCTATGGCGA GGTGACATTG GCGCGCGCGC TTCGGGACTC GCTCAATGTG CCCGCGGTCA AAGTCTCCGA GGCGGTGGGC CGCGACAAGG TGCGTCTGGT GGCAGGCGAA TTCGGCATCG AAAGCGATCT TGCCGATGGG CCCTCGCTGG CGCTGGGCGT CTCTGAAAGC ACGCTCCTGG AAATGACCGG CGCCTATGCG GGCATCCTGA ACGGTGGCTC CTCCGTGACA CCCTACGGGG TGGAGGCGCT GACGCTGGTC GGCGATTCAG AGCCATTGAT GGGCGCGTCC GGCGGCATGG GGGAGCGGGT GATCCGCCCC GTCGCGGCGC AGGAGCTGAT CTGGATGATG GAAAAAGTCA TCGCCGAGGG CACCGGGCAA CGCGCGCAGA TCCCCGGCTG GCAGGCGGCA GGGAAATCCG GCACCACCTC TTCGGCCAAG GATGCATGGT TTATTGGCTT TACCGCCGAT TACGTCGCCG GGGTCTGGAT GGGCTATGAT GACAACACGC CGCTCACCGG TGTCACCGGC GGCGGTTTGC CCGCAGAGAT CTGGCGCGAG ACGATGGTGC GGGTCCACGA TGGGTTGGCC CCCCAGCCCC TGCCAATGGC AGCGCCCGAG CCGATCGTGG TGCCCGAGCC TCAGCCGCAG CGGCGCAATG GGGGCGGCTT TGGCCGGGAG CTTGAGCGCA CCTTGAATGG CGTGTTGCAG GACATCTTTG GCAATTGA
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Protein sequence | MTQGRNSGRG TGRGRGPLVA EKRNLGGNQR KPAKKAPRKR APQKAKRGWS LFGRRKTARP QRRRGLLGWL LLPFQIVARV IWAVSWRMGV VGGLFLAGAV AFHYTKLPEY QALLDGRHQG SVTLLDRNGK TFAWRGDQFG GVVTADTVSP HLKNAIVATE DKRFYRHFGI SPRGIASAVR INLSEGRGPL SGHGGSTITQ QTAKLMCLGV EYDPDIWESE AAYESDCRQS SLWRKGKEAI FALAMEVKYT KNEILSIYMN RAYMGGGAHG VEAAAQRYFG KSANQVNPPE AAMLAGLLTA PSTLAPTNNI ERSRNRAATV LRLMEEQGYL SPKERQMAAA NPAELSEAAA ARAGGYFADW IMDTVPSFLG DQTTEDVVIR TTLDQRLQQA AEDAVNYVFE NKVRAGSKAQ TAVVVMSADG AVRAMVGGRK VRASGVFNRA TQAKRQTGSA FKPFVYAAAL ELGYSPYDRV LDAEYCLDIP GSGPWCPQNY TRKFYGEVTL ARALRDSLNV PAVKVSEAVG RDKVRLVAGE FGIESDLADG PSLALGVSES TLLEMTGAYA GILNGGSSVT PYGVEALTLV GDSEPLMGAS GGMGERVIRP VAAQELIWMM EKVIAEGTGQ RAQIPGWQAA GKSGTTSSAK DAWFIGFTAD YVAGVWMGYD DNTPLTGVTG GGLPAEIWRE TMVRVHDGLA PQPLPMAAPE PIVVPEPQPQ RRNGGGFGRE LERTLNGVLQ DIFGN
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