Gene TM1040_2628 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2628 
Symbol 
ID4077931 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2761148 
End bp2763355 
Gene Length2208 bp 
Protein Length735 aa 
Translation table11 
GC content64% 
IMG OID638007952 
Productpenicillin-binding protein 1A 
Protein accessionYP_614622 
Protein GI99082468 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCAGG GGCGCAATTC TGGGCGCGGC ACTGGACGCG GGCGTGGCCC GCTGGTTGCA 
GAGAAACGCA ATTTGGGCGG CAATCAGCGT AAACCGGCCA AAAAAGCGCC AAGGAAGCGC
GCCCCACAAA AGGCCAAACG CGGCTGGAGC CTGTTTGGAC GGCGCAAGAC CGCGCGCCCG
CAGCGCAGAC GTGGACTCCT GGGCTGGCTG TTGCTGCCTT TTCAGATCGT GGCACGGGTG
ATCTGGGCGG TGAGCTGGCG CATGGGGGTT GTCGGCGGTC TCTTTCTGGC CGGGGCGGTC
GCCTTTCACT ACACCAAGCT GCCCGAGTAT CAGGCGCTGC TGGATGGGCG GCATCAGGGC
TCGGTGACGC TGCTCGATCG CAACGGCAAG ACATTTGCAT GGCGCGGCGA TCAGTTTGGC
GGCGTGGTTA CGGCGGATAC CGTCTCGCCG CATCTGAAGA ACGCGATCGT CGCCACCGAG
GACAAACGGT TTTACCGCCA TTTCGGGATT TCGCCGCGCG GCATCGCCAG CGCGGTGCGC
ATCAACCTCA GCGAAGGGCG TGGCCCGCTG TCGGGGCATG GGGGCTCTAC GATCACCCAG
CAGACCGCCA AGCTGATGTG CCTTGGGGTG GAATATGATC CCGACATCTG GGAGAGCGAA
GCCGCCTATG AGAGCGACTG CCGCCAGTCG TCGCTCTGGC GCAAGGGGAA GGAAGCGATC
TTTGCCCTCG CGATGGAGGT GAAATACACC AAGAACGAGA TCCTCTCCAT CTATATGAAC
CGCGCCTATA TGGGCGGTGG GGCACATGGG GTGGAGGCCG CTGCGCAGCG CTATTTCGGC
AAATCCGCAA ATCAGGTGAA CCCGCCGGAG GCGGCGATGC TGGCGGGGCT CTTGACCGCG
CCGTCGACGC TGGCGCCCAC CAACAATATC GAACGCTCAC GCAATCGCGC GGCCACTGTG
CTGCGGCTGA TGGAAGAACA GGGCTACCTC AGCCCCAAGG AACGCCAGAT GGCCGCCGCC
AATCCCGCGG AGCTGAGCGA GGCGGCGGCA GCGCGCGCGG GGGGCTATTT TGCCGATTGG
ATCATGGACA CGGTGCCGTC CTTTCTGGGC GATCAGACCA CCGAAGATGT GGTGATCCGC
ACCACGCTTG ATCAACGGCT GCAACAGGCC GCCGAGGATG CGGTGAACTA TGTGTTTGAA
AACAAGGTGC GTGCAGGCTC CAAGGCGCAG ACCGCTGTGG TCGTGATGAG CGCCGATGGC
GCGGTGCGGG CCATGGTGGG CGGGCGCAAG GTGCGTGCCT CGGGTGTGTT CAACCGCGCC
ACGCAGGCCA AGCGCCAGAC CGGTTCGGCG TTCAAACCCT TTGTCTATGC CGCCGCGCTG
GAGCTTGGCT ATTCGCCCTA TGACCGGGTG CTGGATGCGG AATATTGTCT CGATATTCCC
GGCTCCGGCC CGTGGTGCCC ACAGAACTAC ACTCGCAAGT TCTATGGCGA GGTGACATTG
GCGCGCGCGC TTCGGGACTC GCTCAATGTG CCCGCGGTCA AAGTCTCCGA GGCGGTGGGC
CGCGACAAGG TGCGTCTGGT GGCAGGCGAA TTCGGCATCG AAAGCGATCT TGCCGATGGG
CCCTCGCTGG CGCTGGGCGT CTCTGAAAGC ACGCTCCTGG AAATGACCGG CGCCTATGCG
GGCATCCTGA ACGGTGGCTC CTCCGTGACA CCCTACGGGG TGGAGGCGCT GACGCTGGTC
GGCGATTCAG AGCCATTGAT GGGCGCGTCC GGCGGCATGG GGGAGCGGGT GATCCGCCCC
GTCGCGGCGC AGGAGCTGAT CTGGATGATG GAAAAAGTCA TCGCCGAGGG CACCGGGCAA
CGCGCGCAGA TCCCCGGCTG GCAGGCGGCA GGGAAATCCG GCACCACCTC TTCGGCCAAG
GATGCATGGT TTATTGGCTT TACCGCCGAT TACGTCGCCG GGGTCTGGAT GGGCTATGAT
GACAACACGC CGCTCACCGG TGTCACCGGC GGCGGTTTGC CCGCAGAGAT CTGGCGCGAG
ACGATGGTGC GGGTCCACGA TGGGTTGGCC CCCCAGCCCC TGCCAATGGC AGCGCCCGAG
CCGATCGTGG TGCCCGAGCC TCAGCCGCAG CGGCGCAATG GGGGCGGCTT TGGCCGGGAG
CTTGAGCGCA CCTTGAATGG CGTGTTGCAG GACATCTTTG GCAATTGA
 
Protein sequence
MTQGRNSGRG TGRGRGPLVA EKRNLGGNQR KPAKKAPRKR APQKAKRGWS LFGRRKTARP 
QRRRGLLGWL LLPFQIVARV IWAVSWRMGV VGGLFLAGAV AFHYTKLPEY QALLDGRHQG
SVTLLDRNGK TFAWRGDQFG GVVTADTVSP HLKNAIVATE DKRFYRHFGI SPRGIASAVR
INLSEGRGPL SGHGGSTITQ QTAKLMCLGV EYDPDIWESE AAYESDCRQS SLWRKGKEAI
FALAMEVKYT KNEILSIYMN RAYMGGGAHG VEAAAQRYFG KSANQVNPPE AAMLAGLLTA
PSTLAPTNNI ERSRNRAATV LRLMEEQGYL SPKERQMAAA NPAELSEAAA ARAGGYFADW
IMDTVPSFLG DQTTEDVVIR TTLDQRLQQA AEDAVNYVFE NKVRAGSKAQ TAVVVMSADG
AVRAMVGGRK VRASGVFNRA TQAKRQTGSA FKPFVYAAAL ELGYSPYDRV LDAEYCLDIP
GSGPWCPQNY TRKFYGEVTL ARALRDSLNV PAVKVSEAVG RDKVRLVAGE FGIESDLADG
PSLALGVSES TLLEMTGAYA GILNGGSSVT PYGVEALTLV GDSEPLMGAS GGMGERVIRP
VAAQELIWMM EKVIAEGTGQ RAQIPGWQAA GKSGTTSSAK DAWFIGFTAD YVAGVWMGYD
DNTPLTGVTG GGLPAEIWRE TMVRVHDGLA PQPLPMAAPE PIVVPEPQPQ RRNGGGFGRE
LERTLNGVLQ DIFGN