| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2603 |
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| Symbol | |
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| ID | 4077514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2740131 |
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| End bp | 2741675 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638007927 |
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| Product | signal recognition particle subunit FFH/SRP54 (srp54) |
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| Protein accession | YP_614597 |
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| Protein GI | 99082443 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0541] Signal recognition particle GTPase |
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| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.44624 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00700873 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTGAAA ATCTATCCGA ACGCCTATCC GGTGTCTTCG ACCGGCTGAC AAAACAGGGC
GCCCTCTCCG AGGACGACGT CAAAACCGCC CTGCGCGAAG TGCGCGTCGC CCTCTTGGAG
GCCGACGTCT CGCTGCCCGT GGCCCGCGAT TTCGTCAAGA AGGTTCAGGA GCAGGCCACC
GGTCAGGCCG TCACCAAATC GGTGACACCG GGCCAGCAGG TCGTGAAGAT CGTTCATGAT
GCGCTTGTCG AGACCCTGCG AGGCGACGAG GACCCCGGGG CGCTCAAGAT CGACAACCCG
CCCGCACCGA TCCTGATGGT CGGCCTGCAG GGCTCCGGCA AGACCACCAC CACCGGTAAG
CTTGCAAAGC GCCTCAAGGA AAAAGAGGGC AAGAAAGTGC TTCTTGCCTC GCTCGACGTC
TATCGCCCGG CAGCGATGGA TCAGCTGGCG GTGCTTGGTA CCCAGATCGG CGTCGACACC
CTGCCCATCG TCAAAGGCCA AAGCCCGGTC GACATCGCCA AACGCGCCAA ACAGCAGGCC
GCGCTTGGGG GCTATGACGT CTATATGCTC GACACGGCCG GTCGTCTGCA AATCGACGAG
ACCCTCATGA AAGAGGTCGA AGACGTCCGC GACGTGGTCT CCCCGCGCGA GACGCTTCTG
GTGGTAGATG GTCTGACCGG TCAGGTTGCG GTCGAGGTCG CGGAAGAATT CGACAACAAG
ATCGGCATCT CCGGCGTCGT GCTGACCCGG ATGGACGGCG ACGGGCGCGG CGGTGCGGCG
CTCTCGATGC GCGCCGTGAC CGGCAAGCCC ATCCGCTTTG TCGGCCTTGG CGAGAAGATG
GACGCCATCG AGACCTTCGA GCCGGACCGG ATCGCAGGCC GCATCCTTGG CATGGGCGAC
ATTGTGGCCC TCGTCGAGAA GGCGCAGGAA ACCATCGAGG CTGAGCAGGC CGAGCGCATG
ATGAAGCGCA TGATGAAAGG TCAGTTCAAT ATGAACGACC TGCGCATGCA GTTGGAGCAG
ATGCAGCAGA TGGGCGGCAT GCAGGGCATG ATGCAGATGA TGCCGGGCAT GGGCAAAATG
GCCAAACAGG TCGAAGAGTC CGGCTTTGAC GACAAGATGG TCAAGCGCCA GATCGCGATG
ATCCAGTCCA TGACCAAGAA AGAGCGCGCA AACCCCGCGC TGCTGCAGGC CAGCCGCAAG
AAACGCATTG CAGCAGGCTC CGGCATGGAG GTCTCGGACC TCAACAAGCT CTTGAAGATG
CACCGCCAGA TGGCGGACGT CATGAAGAAG ATGGGCAAAA TGGGCAAAGG CAAGATGCTG
AAACAGGCCA TGAAAGGCAT GTTCGGCAAA GGCGGCATGC CCGAGATGCC CGGTGGCATG
CCCGGCGGTA TGGATCCCTC GCAGATGGAC CCCAAGGCGC TCGAGGCCGC AGCCAAGGCC
ATGGGCGGCA AGGGTGGTTT GCCCGGCGGT CTCGGCGGGC TGGGTGGCCT CGGTGGCGGC
ATGGGCCTGC CCGGTGGCCT CTCTGGATTT GGCAAGAAGA AGTAA
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| Protein sequence | MFENLSERLS GVFDRLTKQG ALSEDDVKTA LREVRVALLE ADVSLPVARD FVKKVQEQAT
GQAVTKSVTP GQQVVKIVHD ALVETLRGDE DPGALKIDNP PAPILMVGLQ GSGKTTTTGK
LAKRLKEKEG KKVLLASLDV YRPAAMDQLA VLGTQIGVDT LPIVKGQSPV DIAKRAKQQA
ALGGYDVYML DTAGRLQIDE TLMKEVEDVR DVVSPRETLL VVDGLTGQVA VEVAEEFDNK
IGISGVVLTR MDGDGRGGAA LSMRAVTGKP IRFVGLGEKM DAIETFEPDR IAGRILGMGD
IVALVEKAQE TIEAEQAERM MKRMMKGQFN MNDLRMQLEQ MQQMGGMQGM MQMMPGMGKM
AKQVEESGFD DKMVKRQIAM IQSMTKKERA NPALLQASRK KRIAAGSGME VSDLNKLLKM
HRQMADVMKK MGKMGKGKML KQAMKGMFGK GGMPEMPGGM PGGMDPSQMD PKALEAAAKA
MGGKGGLPGG LGGLGGLGGG MGLPGGLSGF GKKK
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