Gene TM1040_2600 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2600 
Symbol 
ID4077511 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2737602 
End bp2738183 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content61% 
IMG OID638007924 
Product(Acyl-carrier protein) phosphodiesterase 
Protein accessionYP_614594 
Protein GI99082440 
COG category[I] Lipid transport and metabolism 
COG ID[COG1182] Acyl carrier protein phosphodiesterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00466922 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCCAGA CCGTACTTCA CATCGACAGC TCTGCCCGCA AAACCGGCTC GATCTCGCGC 
GACCTGACTG CGCAAGTTGT GGCCCGCCTC GGTGCCGAGA CCGTTCTGCA CCGTGACCTG
TCAACCCCGC TGCCGCTCTT GGACGAGACC TGGATCGGCG CGAATTTCAC CGCCCCCGAG
GAGCGCACGG AGTCCCAAAA AGACGTATTG GCCCTGTCGG ACCAATTGAT CCAAGAGATC
AAACAGGCCG ACACGCTTGT GATCGGCGTT CCGATCTACA ACTTTGCCAT TCCAACTACG
CTGAAGGCGT GGATCGACCA GATTGCCCGT GCGGGCGTGA CCTTCCGCTA TACCGAGAAC
GGACCGGAAG GGCTGCTGAC CGGCAAACGT GCGATCCTCG TGGTGGCCTC GGGCGGCACC
GAAGCGGGGT CGGACATCGA TTATGCCAGC CGCTACCTGC GTCACATGCT GGGCTTTATC
GGTATCACCG AAGTAGAAGT TGTCGCCGCC GACCAGCAGG CGATCGATGC CGAAGCTTCG
GTCCAGAAAG CCAAAGACGC AATCGCGCAA CTGGCGGCGT AA
 
Protein sequence
MTQTVLHIDS SARKTGSISR DLTAQVVARL GAETVLHRDL STPLPLLDET WIGANFTAPE 
ERTESQKDVL ALSDQLIQEI KQADTLVIGV PIYNFAIPTT LKAWIDQIAR AGVTFRYTEN
GPEGLLTGKR AILVVASGGT EAGSDIDYAS RYLRHMLGFI GITEVEVVAA DQQAIDAEAS
VQKAKDAIAQ LAA