| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2596 |
|---|
| Symbol | |
|---|
| ID | 4077507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2734304 |
|---|
| End bp | 2735191 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638007920 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_614590 |
|---|
| Protein GI | 99082436 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00519891 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTGC GGTATTGGGC GGTCATCGTA ATTCTCGGCA TCGGTTGGGG AATGTCCTTC
ATGTTCAACG CGGTGCTTTT GCGCGAGCTG GCGCCGTTAT GGGTTTCGGT CGGGCGTGTT
GGGCTTGGGG CGCTGGGCTG CTGGATGTTC CTGCTGGCGC GCGGGCGTGA TTGGCGCATC
TCGCCAGCGC GCGCGCTGGC GCTGGCCGGG TTTGGCGCGC TGAGCTATGC GATCCCGTTT
TCCTTTTACG CCATCGGACA ACAGCATATT GCCAGTGGCG TGGCCGGGAT CGTCAACGCC
TGCACCCCGG CGCTTGCGGT GGTGGTGACC CATTTCTGGC CGGGCGGCGA ACGCGCCAAC
TGGCGCAAGA GCCTCGGCGT TGGCGCAGGG CTCGCAGGCA TCGTGATCCT GTCGCTGCCG
ATCCTGCAAA GCGGGCAGAG CAGTGCCATC TGGGCCGTGT TTGTCACTCT TGGTGCACCG
CTGTGCTATG CGTTCTCGGT CAATGTCGCG CGCCAGTTCC GCGATATGGA GCCGGTGGTG
CTGGTGGCCT GGGCGCTGAG CGGTGCAACG GCCTTTATCC TGCCGGTTGC GTTCTGGGTG
GAGGGCGCGC CACAGGCTCT GACGGCGCAG GCCTGGGGCG CTTTGCTGGT GATTGGTTTT
GCACTCACCT CGGCGGCCTT CATCGCCATG TATTGGGTGC TGCCCAAGGT GGGGCCAACC
AACGTCACCC TGCCCACGCT GATCGCGCCG GCCTCGGCGC TCACGCTGGG TGTTCTGGTT
CTGGGCGAGC CGCTTGAGAT CAGTCACCTG ACCGGGCTCT CTGCGATCCT CTTTGGCCTT
CTGTTGATCG ACGGACGATT GTTTAAAAGC CGGGTTCCTG CGGTGTGA
|
|---|
| Protein sequence | MALRYWAVIV ILGIGWGMSF MFNAVLLREL APLWVSVGRV GLGALGCWMF LLARGRDWRI
SPARALALAG FGALSYAIPF SFYAIGQQHI ASGVAGIVNA CTPALAVVVT HFWPGGERAN
WRKSLGVGAG LAGIVILSLP ILQSGQSSAI WAVFVTLGAP LCYAFSVNVA RQFRDMEPVV
LVAWALSGAT AFILPVAFWV EGAPQALTAQ AWGALLVIGF ALTSAAFIAM YWVLPKVGPT
NVTLPTLIAP ASALTLGVLV LGEPLEISHL TGLSAILFGL LLIDGRLFKS RVPAV
|
|---|
| |