| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2585 |
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| Symbol | cobD |
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| ID | 4077496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2722447 |
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| End bp | 2723358 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638007909 |
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| Product | cobalamin biosynthesis protein |
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| Protein accession | YP_614579 |
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| Protein GI | 99082425 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1270] Cobalamin biosynthesis protein CobD/CbiB |
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| TIGRFAM ID | [TIGR00380] cobalamin biosynthesis protein CobD |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.650377 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000040763 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGCACCG CCGCCCTGTT GATCCCCGCC ATGATCCTCG ACGCCGCATT TGGCGAGCCC
AAATGGCTCT GGTCGCGGCT GCCGCATCCC GCTGTGCTGA TGGGCAAGCT GGTGCAAGCG
CTGGATGATC GGCTGAACGA AGGTGACGGG CGCCAGGTCA AAGGTGTTAT CGCGGTCGCG
GTGCTGGTAT TCGTCGGTTT GCTCCTCGGC TGGATCCTGT CCTGGTTTGG CAGCCTCGTA
AGCGTTCTGA TCGCCGCCAT CCTGATCGCT CAACGGTCTC TTATTGACCA TGTGCGCGCA
GTCGCCACCG GGCTTCAGAA TGACCTCGAC GCGGGGCGCT CTGCGGTCGC GATGATCGTC
AGCCGCGACA CCGCGACCAT GACCGGCCCG CAGATCGCGC GCTCCGCCAT CGAGAGCGGT
GCGGAGAATT TCTCCGACGG GGTTATCGCG CCTGCATTCT GGTTTCTGGT CGCGGGCCTG
CCGGGGCTGC TGATCTACAA GCTCATCAAC ACCGCCGACA GCATGATTGG CTATCGGACC
GAGGCGTACG AGGACTTCGG CTGGGCAGCG GCGCGGCTCG ACGATGTGCT CAACATCCTG
CCGGCGCGCC TCAGCGCACT CCTGATCGCG CTTGTGACCG GCCGCGCAGG TGATTGGGGC
GAGATCAGCG CGGATGCACG CAAGCATCGC TCTCCCAATG CAGGCTGGCC CGAGGCAGCG
ATGGCGCGCG CACTTGGTGT CGCTCTGGCC GGGCCGCGCT CTTATGATGG CGAAATGCGT
CCCTTTGCCT GGGTAAACGC GAGCGGATCA AAAAGCGCCA GCGCTCATAG CATCACCCGC
TGTTGCGAGG TGCTTTGGAA ATCCTGGGGT CTCGCGCTGG TTCTGGTGGT TGCATTGGGT
CTGCTCTTCT AG
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| Protein sequence | MSTAALLIPA MILDAAFGEP KWLWSRLPHP AVLMGKLVQA LDDRLNEGDG RQVKGVIAVA
VLVFVGLLLG WILSWFGSLV SVLIAAILIA QRSLIDHVRA VATGLQNDLD AGRSAVAMIV
SRDTATMTGP QIARSAIESG AENFSDGVIA PAFWFLVAGL PGLLIYKLIN TADSMIGYRT
EAYEDFGWAA ARLDDVLNIL PARLSALLIA LVTGRAGDWG EISADARKHR SPNAGWPEAA
MARALGVALA GPRSYDGEMR PFAWVNASGS KSASAHSITR CCEVLWKSWG LALVLVVALG
LLF
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