| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2569 |
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| Symbol | ispH |
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| ID | 4076700 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2711132 |
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| End bp | 2712082 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638007893 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_614563 |
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| Protein GI | 99082409 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000130157 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000449724 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGCCGCCA AACCACCCCT CACCCTCTAT CTTGCAGCTC CGCGTGGCTT TTGCGCAGGT
GTCGACCGGG CCATCAAGAT CGTGGAGATG GCGCTCGAGA AATGGGGCGC TCCGGTCTAT
GTGCGCCATG AGATCGTTCA CAACAAGTTT GTGGTCGACG GGCTGCGGGA CAAGGGCGCG
GTCTTTGTCG AGGAACTGGA GGAATGCCCG GACGACCGGC CGGTGATTTT CTCTGCCCAT
GGCGTGCCGA AATCCGTGCC GGCCGCCGCC GAGGCGCGCC AGATGGTCTA TGTCGACGCC
ACCTGCCCGC TTGTCTCAAA GGTTCATATC GAGGCCCAGC GCCACGCCGA AGCCGGGCTT
CAAATGATCA TGATCGGTCA CAAAGGGCAC CCGGAGACGG TTGGCACCAT GGGTCAACTG
CCCGAAGGAG AGGTCTTGCT GGTCGAAACC GTCGAGGATG TGGCCCAGGT GGAGGTCCGC
GACCCGGAGC GGCTCGCCTT TGTCACTCAG ACCACCCTCT CGGTGGATGA CACCAAAGAC
ATCGTGGCGG CGCTGCAAGC GCGTTTCCCG GCCATCGTCG GCCCCCACAA GGAAGACATC
TGCTACGCCA CCACCAATCG GCAAGAAGCC GTGAAAGAAG TGGCCCCCAA AGCAGACGCA
CTCTTGGTGG TCGGTGCGCC GAACTCGTCG AACTCGCGCC GACTGGTCGA GGTCGGGGCC
AAGAATGGCT GCAGCTATGC GCAGCTGGTA CAGCGGGCCG AAAACATCGA CTGGCGCGCG
CTGGAGGGCA TCCAGAGCAT CGCCATCACT GCGGGCGCCT CTGCGCCCGA GCTATTGGTG
AACGAGGTGA TCGACGCCTT TCGCGACCGC TATGAGGTGA CGGTGGAGCT GGTTGAGACC
GCCGTGGAGC GGGTGGAGTT CAAAGTGCCG CGTGTCCTGC GCACGGCCTG A
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| Protein sequence | MAAKPPLTLY LAAPRGFCAG VDRAIKIVEM ALEKWGAPVY VRHEIVHNKF VVDGLRDKGA
VFVEELEECP DDRPVIFSAH GVPKSVPAAA EARQMVYVDA TCPLVSKVHI EAQRHAEAGL
QMIMIGHKGH PETVGTMGQL PEGEVLLVET VEDVAQVEVR DPERLAFVTQ TTLSVDDTKD
IVAALQARFP AIVGPHKEDI CYATTNRQEA VKEVAPKADA LLVVGAPNSS NSRRLVEVGA
KNGCSYAQLV QRAENIDWRA LEGIQSIAIT AGASAPELLV NEVIDAFRDR YEVTVELVET
AVERVEFKVP RVLRTA
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