Gene TM1040_2569 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2569 
SymbolispH 
ID4076700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2711132 
End bp2712082 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content63% 
IMG OID638007893 
Product4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
Protein accessionYP_614563 
Protein GI99082409 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000130157 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000449724 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCCGCCA AACCACCCCT CACCCTCTAT CTTGCAGCTC CGCGTGGCTT TTGCGCAGGT 
GTCGACCGGG CCATCAAGAT CGTGGAGATG GCGCTCGAGA AATGGGGCGC TCCGGTCTAT
GTGCGCCATG AGATCGTTCA CAACAAGTTT GTGGTCGACG GGCTGCGGGA CAAGGGCGCG
GTCTTTGTCG AGGAACTGGA GGAATGCCCG GACGACCGGC CGGTGATTTT CTCTGCCCAT
GGCGTGCCGA AATCCGTGCC GGCCGCCGCC GAGGCGCGCC AGATGGTCTA TGTCGACGCC
ACCTGCCCGC TTGTCTCAAA GGTTCATATC GAGGCCCAGC GCCACGCCGA AGCCGGGCTT
CAAATGATCA TGATCGGTCA CAAAGGGCAC CCGGAGACGG TTGGCACCAT GGGTCAACTG
CCCGAAGGAG AGGTCTTGCT GGTCGAAACC GTCGAGGATG TGGCCCAGGT GGAGGTCCGC
GACCCGGAGC GGCTCGCCTT TGTCACTCAG ACCACCCTCT CGGTGGATGA CACCAAAGAC
ATCGTGGCGG CGCTGCAAGC GCGTTTCCCG GCCATCGTCG GCCCCCACAA GGAAGACATC
TGCTACGCCA CCACCAATCG GCAAGAAGCC GTGAAAGAAG TGGCCCCCAA AGCAGACGCA
CTCTTGGTGG TCGGTGCGCC GAACTCGTCG AACTCGCGCC GACTGGTCGA GGTCGGGGCC
AAGAATGGCT GCAGCTATGC GCAGCTGGTA CAGCGGGCCG AAAACATCGA CTGGCGCGCG
CTGGAGGGCA TCCAGAGCAT CGCCATCACT GCGGGCGCCT CTGCGCCCGA GCTATTGGTG
AACGAGGTGA TCGACGCCTT TCGCGACCGC TATGAGGTGA CGGTGGAGCT GGTTGAGACC
GCCGTGGAGC GGGTGGAGTT CAAAGTGCCG CGTGTCCTGC GCACGGCCTG A
 
Protein sequence
MAAKPPLTLY LAAPRGFCAG VDRAIKIVEM ALEKWGAPVY VRHEIVHNKF VVDGLRDKGA 
VFVEELEECP DDRPVIFSAH GVPKSVPAAA EARQMVYVDA TCPLVSKVHI EAQRHAEAGL
QMIMIGHKGH PETVGTMGQL PEGEVLLVET VEDVAQVEVR DPERLAFVTQ TTLSVDDTKD
IVAALQARFP AIVGPHKEDI CYATTNRQEA VKEVAPKADA LLVVGAPNSS NSRRLVEVGA
KNGCSYAQLV QRAENIDWRA LEGIQSIAIT AGASAPELLV NEVIDAFRDR YEVTVELVET
AVERVEFKVP RVLRTA