| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2556 |
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| Symbol | recO |
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| ID | 4076687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2700556 |
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| End bp | 2701281 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638007880 |
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| Product | DNA repair protein RecO |
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| Protein accession | YP_614550 |
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| Protein GI | 99082396 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1381] Recombinational DNA repair protein (RecF pathway) |
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| TIGRFAM ID | [TIGR00613] DNA repair protein RecO |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.671513 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0016899 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGACTGGC GCGATCAAGG CATATTGCTC ACGGTGCGCC GCCATGGCGA ATCCTCGGCG
TTGATCGAAG TCTTCACTGA AGATCATGGG TTGCATGCGG GTCTCGTGCG TGGAGGCGCC
AGCCGCAAGA TGGCGCCGCA TCTGCAACCC GGCGCGCAGC TGGACCTCAC ATGGTCAGCG
CGTCTCGAAG ACCACTTGGG CACCTACAAG GCCGAACCGT TGCGCAGCCG CGCGGGCATG
GCGCTGTCGG GACGTCTTGC GCTTGCAGGC CTCAATGCGG TTTGTGCGCT GTTGGCCTTT
GCCCTGCCGG ATCGCGCACC TTATCCCGCG CTCTATCATC GCAGCTCCGC GCTTCTGGAC
CTTCTGGACA GCGAAGACCT CTGGCCTTTG GCCTATCTGA GATGGGAACT CTCGCTGCTC
GAAGATCTGG GCTACGGGCT CGATCTTTCC GCCTGCGCCG CTACGGGCGT GACACAGGAT
CTGAGATATG TCTCGCCCAA AACCGGGCGC GCGGTCTCCG GCGCGGCAGC TGGCGAATGG
GCCGACCGGC TGCTGCCCTT GCCCCCCGTG ATGCGGGGCG AGGGGGCAGC CGAAGACATC
GAGATCCTGA CCGCACTCAG AACCACGGGA TTTTTCCTTG AATCAAAGCT TGCGCCTGCT
TTGGGAAATC GTCCCATCCC GGAGGCGCGC GGCCGGTTTC TGGATGCGCT GGCCCGTCGC
GTTTAG
|
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| Protein sequence | MDWRDQGILL TVRRHGESSA LIEVFTEDHG LHAGLVRGGA SRKMAPHLQP GAQLDLTWSA
RLEDHLGTYK AEPLRSRAGM ALSGRLALAG LNAVCALLAF ALPDRAPYPA LYHRSSALLD
LLDSEDLWPL AYLRWELSLL EDLGYGLDLS ACAATGVTQD LRYVSPKTGR AVSGAAAGEW
ADRLLPLPPV MRGEGAAEDI EILTALRTTG FFLESKLAPA LGNRPIPEAR GRFLDALARR
V
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