| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2552 |
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| Symbol | |
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| ID | 4076683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2694826 |
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| End bp | 2696676 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638007876 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_614546 |
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| Protein GI | 99082392 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.437338 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0565568 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACCG CGGCCCTGAT GACCTCGGCG CTTGCGGTAA AGAGCACAGA GAGCGAGGCG
ATCACCGTCA GCCATGGCTA TTCGTTTTAC GGCGATCTGG ATTATCCGGC TGATTTTGAA
CACTTCGACT ATGTAAACCC GGACGCGCCG AAGGGAGGGG AGCTTGCGAT TCCCTTCATC
GGGACTCTCG ACAGCATGAA CCCCTATTCT GGCAAGGGTC GGGCGCATGC GTTTTCTGTC
TACCCTTACG AGAGCCTCCT CTCGGATGCG GCACCTGCGG ATAAATATGG TCAGTCCTAC
TGCCTGCTCT GCGAAACCGT GGAATATCCC GAAGACAAGA GCTGGGTGAT CTTTCGCATG
CGTCCCGAGG CGCGGTTCTC CGACGGCACA CCGGTCACCG CACATGACAT CGCCTTCAGC
CACAACCTGC TGCTGGATCA AGGTTTGAAG TCCTACGCAG ACTTCATTCG CCGGCTGATC
CCAAAAGTTG AGGTGATCGA CGATCACACC ATCAAGTTCT ATTTTGCTGA TGGCGTCTCA
CGCCGGAGCC TGATCGAGCA GGTGGGCGGC GTACCGGCCT GGTCGAAGAA GTGGTTCGAT
GAAACGGGAC AGAAGCTCAA CGAGAACTGG ATCGAGGGGC CTCCGGGCTC TGGTCCCTAT
GTGATCGAGG AAATCGACCT GTCGCGTCGT ATCGTGCTGA AACGCAACCC TGATTATTGG
GGCAAGGATC TGCCGGTCAA CCAGGGGCGG CACAACTTTG ATTCGCTGCG GGTGGAAATC
TTTGCCGACG ACACGGCAGC CTTTGAGGCC TTCAAGGCGG GCGAGTATAC CTTCCGCGCC
GAAGGCGACA GCAAGAAATG GGCCAGCGGC TATGACTTTC CGAAGGTCGA TAGCGGCGCG
GTGAAACTCG AAGAGCTGCC AAATGGTGCA CCGCCTGCGT CATCGGGCAT CGTGTTCAAT
CTCGCCTCTC CCGAATTGCA AGATCGGCGT GTGCGCGAAG CGCTGGCTCT GGCGTTCAAC
TTCGAGTGGT CCAACGAGAG CCTTCTCTAT GGTCTCTTTG ATCGCCGTGC GTCGTTCACC
CAGAACTCCC CCCTGATGGC CAAAGGTGTG CCCGAGGGCG CCGAGCGCGC GTTTCTGCAG
AGCCTCGGCG ACCTTGTTCC GGACGAGATG CTGACCGAGG AGGTCTATAT CCCGCCGACC
TCCGATCCTT CGCGACTGTT TGACCGCCGC AACGCACGCA AGGCAGCGGC CTTGCTGGAT
GCGGCCGGGT ATACGGTGGG CGATGGCGGC ATGCGCATGT CTCCGGATGG CTCTGCGTTT
GAGCTGGATT TCCTGTTTTC CTCCTCATCC TCGCCCACCA CGCGCGGGGT GATGGAGAAC
TTCGTCGACA ACCTCGAAAA CCTTGGCGTT CAGGTCAATT TCGAGGTGGT GGATACGGCG
CAATACACCA GCCGGGAACG GGACCGCGAT TATGATCTGG TGGTCGACAG CTACACCACG
TTCCTTGGCA CCGGTACCGG TCTGGAGCAG CGGTTTGGGT CCGAGGCCGC AGCCTTCTCG
CTGTTCAACC CCGCCGGTTT GGCCTCCCCG CTGGTGGATG AGATCATCAC GAGATCGCTG
CACGCTGAGA CCCGCGAAGA AGAAACTACC GTCATGACGG CGCTGGATCG CGCTTTGCGG
CATGAGTTCA TCATGATCCC GCTGTGGTAT AACCCGAACC ATTGGGCCGC CTATTACGAT
CAATATGAGC ACCCGGCGGA AATCCCGCCC TATAGCCTCG GGTATCTGGA CTTCTGGTGG
TATAACGAGG ACAAGGCCAA AGCGCTGCGC GATGCTGGCG CGCTGAGGTA A
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| Protein sequence | MSTAALMTSA LAVKSTESEA ITVSHGYSFY GDLDYPADFE HFDYVNPDAP KGGELAIPFI
GTLDSMNPYS GKGRAHAFSV YPYESLLSDA APADKYGQSY CLLCETVEYP EDKSWVIFRM
RPEARFSDGT PVTAHDIAFS HNLLLDQGLK SYADFIRRLI PKVEVIDDHT IKFYFADGVS
RRSLIEQVGG VPAWSKKWFD ETGQKLNENW IEGPPGSGPY VIEEIDLSRR IVLKRNPDYW
GKDLPVNQGR HNFDSLRVEI FADDTAAFEA FKAGEYTFRA EGDSKKWASG YDFPKVDSGA
VKLEELPNGA PPASSGIVFN LASPELQDRR VREALALAFN FEWSNESLLY GLFDRRASFT
QNSPLMAKGV PEGAERAFLQ SLGDLVPDEM LTEEVYIPPT SDPSRLFDRR NARKAAALLD
AAGYTVGDGG MRMSPDGSAF ELDFLFSSSS SPTTRGVMEN FVDNLENLGV QVNFEVVDTA
QYTSRERDRD YDLVVDSYTT FLGTGTGLEQ RFGSEAAAFS LFNPAGLASP LVDEIITRSL
HAETREEETT VMTALDRALR HEFIMIPLWY NPNHWAAYYD QYEHPAEIPP YSLGYLDFWW
YNEDKAKALR DAGALR
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