| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2542 |
|---|
| Symbol | |
|---|
| ID | 4076673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2684043 |
|---|
| End bp | 2684927 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638007866 |
|---|
| Product | cytochrome c oxidase, cbb3-type, subunit III |
|---|
| Protein accession | YP_614536 |
|---|
| Protein GI | 99082382 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2010] Cytochrome c, mono- and diheme variants |
|---|
| TIGRFAM ID | [TIGR00782] cytochrome c oxidase, cbb3-type, subunit III |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.854548 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAA CGGGCAATAA AAAGACAGTA AAGATCCACG AGGGCGATCC AAACACCACC
GGCCACGAGT GGGACGGGAT CATGGAATTC GACAACCCGA TGCCGCGCTG GTGGCTGTGG
GTGTTCTACG CCACGATCAT CTGGGGCATC GGATATACCA TCGCCTATCC TGCATGGCCG
ATGGTCAGCG CGGCCACCTC CGGGATCACC GGATGGTCTT CGCGTGGTCA GGTCGAGGCC
GAGATTGCCG CCGTCGATGA GGCCAACGCG CCCATCAACG CCCAGCTCGA AGCGCTGGAA
CTTGCCGCCA TTCCGGGCCA TCCCGAGCTT GAGGGCTACG CCGTCTCTGC CGGGGCCGCC
GTCTTCAAGA CATGGTGTGC GCAGTGTCAC GGGTCTGGTG CGGCGGGGGC CAAAGGCTAT
CCGAACCTCT TGGATGATGA CTGGCTCTGG GGTGGCACGA TGGAAGACAT TCATGCCACG
GTCTCTTATG GCATTCGCAA CGAGGAAAGC GACGATGCCC GCTATTCCGC AATGCCCGCC
TTTGGTCGTG ATGAACTGCT CCAAAAAGAA GAGGTCAGTC AGGTCGTAAA CTACGTGATG
TCCCTGTCAG ACACGCCCAA AGACGCAAGC GAAGTGGCTG CGGGCGCGGT TGTGTTCGAA
GAAAACTGCG CCTCCTGTCA TGGGGCGGAC GCATCGGGTG ATATCTACCA AGGTGCGCCG
AACCTGAAGG ACGCGATCTG GCTCTATGGG GGCGACTACG ACACTCTCTA CGAGACAGTC
TGGAACTCGC GTTTTGGGGT CATGCCGAAC TGGGACAGCC GTCTGAGCGA AGCTGAGATC
CGCGCAGTCA GCGCCTATGT CCACCAATTG GGTGGCGGCG AGTAA
|
|---|
| Protein sequence | MSETGNKKTV KIHEGDPNTT GHEWDGIMEF DNPMPRWWLW VFYATIIWGI GYTIAYPAWP
MVSAATSGIT GWSSRGQVEA EIAAVDEANA PINAQLEALE LAAIPGHPEL EGYAVSAGAA
VFKTWCAQCH GSGAAGAKGY PNLLDDDWLW GGTMEDIHAT VSYGIRNEES DDARYSAMPA
FGRDELLQKE EVSQVVNYVM SLSDTPKDAS EVAAGAVVFE ENCASCHGAD ASGDIYQGAP
NLKDAIWLYG GDYDTLYETV WNSRFGVMPN WDSRLSEAEI RAVSAYVHQL GGGE
|
|---|
| |