Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2530 |
Symbol | |
ID | 4076532 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 2670697 |
End bp | 2671575 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638007854 |
Product | glycoside hydrolase family protein |
Protein accession | YP_614524 |
Protein GI | 99082370 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTTTTC ATCGTTTGTT AAGCATGGGA CTACTCGCGG CTCTCGCAGC CTGTGGCAGC ACTACACAGG ATGCAGTGCC TCCCCCGCCT CTGGAGGCAG CGGCCGAACA GGTCGTAAAC CCTGCCTTCG CCCGTGCCTA TGCCGCTCTG TCGACCTATC CAAAATACGG CGACAACGAT CCGCATGACT GGGAGGGGGG AACGCCATGG GCTTACCCTA TTCACGGTAT TGATGTGGCG CGATACCAAG GAGCGATAGA TTGGCGGCAG GTGGGCGCGG CAGGCGTGTC CTTTGCGTGG ATCAAGGCGA CCGAAGGTGG CGATCTCCTT GATCCCGAGT TCAAGTCCAA CTGGCGCGGC GCACGGCGGG CCGGGGTGCG GCGGGGCGCC TATCATTTCT ATTATTTCTG CCGTAGTCCC GAAGATCAGG CGCGCTGGTT TATTCGCAAT GTCCCAAAAG AAGCGGGCAG TTTGCCCCCG GTTCTGGATA TTGAGTGGAA CCACACGTCG CCGAGTTGCA AGCGCCGCCC GTCTGGCGCG GAAGCGCGCC ATGAGGCGGA GCGCTTTATC AAGAAGATCA CGCAGCATTA CGGGCGCAGG CCCGTGGTTT ATACAACTGT CGACTTCTAC CGCGACACCA ACATCGGTCG ACTGCGCGGT GTCGATTTTT GGCTCCGTTC GGTGGCTGGC CACCCGGAAC AGGTCTATCC GGGCGCATCT TGGGCGTTTT GGCAGTACAC CGGTACCGGG TCGGTGCCGG GCATTACGGG GGATGTGGAT CTCAACGTCT TTGCCGGGAG TGCCGAAGGC TGGCTGAAGT GGCTAGGCTA CCAGAAGTAT GTGGAGTCAG AACAAGTACC CTCTCGGCCC GAGGAGTAA
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Protein sequence | MIFHRLLSMG LLAALAACGS TTQDAVPPPP LEAAAEQVVN PAFARAYAAL STYPKYGDND PHDWEGGTPW AYPIHGIDVA RYQGAIDWRQ VGAAGVSFAW IKATEGGDLL DPEFKSNWRG ARRAGVRRGA YHFYYFCRSP EDQARWFIRN VPKEAGSLPP VLDIEWNHTS PSCKRRPSGA EARHEAERFI KKITQHYGRR PVVYTTVDFY RDTNIGRLRG VDFWLRSVAG HPEQVYPGAS WAFWQYTGTG SVPGITGDVD LNVFAGSAEG WLKWLGYQKY VESEQVPSRP EE
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