Gene TM1040_2530 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2530 
Symbol 
ID4076532 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2670697 
End bp2671575 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content60% 
IMG OID638007854 
Productglycoside hydrolase family protein 
Protein accessionYP_614524 
Protein GI99082370 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTTTC ATCGTTTGTT AAGCATGGGA CTACTCGCGG CTCTCGCAGC CTGTGGCAGC 
ACTACACAGG ATGCAGTGCC TCCCCCGCCT CTGGAGGCAG CGGCCGAACA GGTCGTAAAC
CCTGCCTTCG CCCGTGCCTA TGCCGCTCTG TCGACCTATC CAAAATACGG CGACAACGAT
CCGCATGACT GGGAGGGGGG AACGCCATGG GCTTACCCTA TTCACGGTAT TGATGTGGCG
CGATACCAAG GAGCGATAGA TTGGCGGCAG GTGGGCGCGG CAGGCGTGTC CTTTGCGTGG
ATCAAGGCGA CCGAAGGTGG CGATCTCCTT GATCCCGAGT TCAAGTCCAA CTGGCGCGGC
GCACGGCGGG CCGGGGTGCG GCGGGGCGCC TATCATTTCT ATTATTTCTG CCGTAGTCCC
GAAGATCAGG CGCGCTGGTT TATTCGCAAT GTCCCAAAAG AAGCGGGCAG TTTGCCCCCG
GTTCTGGATA TTGAGTGGAA CCACACGTCG CCGAGTTGCA AGCGCCGCCC GTCTGGCGCG
GAAGCGCGCC ATGAGGCGGA GCGCTTTATC AAGAAGATCA CGCAGCATTA CGGGCGCAGG
CCCGTGGTTT ATACAACTGT CGACTTCTAC CGCGACACCA ACATCGGTCG ACTGCGCGGT
GTCGATTTTT GGCTCCGTTC GGTGGCTGGC CACCCGGAAC AGGTCTATCC GGGCGCATCT
TGGGCGTTTT GGCAGTACAC CGGTACCGGG TCGGTGCCGG GCATTACGGG GGATGTGGAT
CTCAACGTCT TTGCCGGGAG TGCCGAAGGC TGGCTGAAGT GGCTAGGCTA CCAGAAGTAT
GTGGAGTCAG AACAAGTACC CTCTCGGCCC GAGGAGTAA
 
Protein sequence
MIFHRLLSMG LLAALAACGS TTQDAVPPPP LEAAAEQVVN PAFARAYAAL STYPKYGDND 
PHDWEGGTPW AYPIHGIDVA RYQGAIDWRQ VGAAGVSFAW IKATEGGDLL DPEFKSNWRG
ARRAGVRRGA YHFYYFCRSP EDQARWFIRN VPKEAGSLPP VLDIEWNHTS PSCKRRPSGA
EARHEAERFI KKITQHYGRR PVVYTTVDFY RDTNIGRLRG VDFWLRSVAG HPEQVYPGAS
WAFWQYTGTG SVPGITGDVD LNVFAGSAEG WLKWLGYQKY VESEQVPSRP EE