| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2495 |
|---|
| Symbol | |
|---|
| ID | 4076860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2635844 |
|---|
| End bp | 2638015 |
|---|
| Gene Length | 2172 bp |
|---|
| Protein Length | 723 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638007819 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_614489 |
|---|
| Protein GI | 99082335 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.689072 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTGC GCCTAGTGTG CCTGACCTCC GCCCTCGCGC TGACCGCCGG TTTTGCGCAG
GCTGAAAAAG CCTTCAACCG GATCGCGTCT TTCCCCGTCA TCAAGAACAT GGCCGAAGGT
GCCGACCAGA GCCGCGAAAG CTCGCCCGAG ATCATCGACG TGACCGCCGA TGGCATGACG
CTGGTCTATA CCGACAGCCC GCTGGGCGCG CTTGGGATGA TCGACATCAC CGATGCCGCC
AACCCGGTGC CCAAAGGCAA TATCGCCCTT CCGGGCGAGC CCACCTCGGT CGCAGTGGTC
GGTACCATCG CATATGTCGG GGTCAACACC TCGGAGAGCT ACACCCAGCC TTCCGGGCAA
GTCATGGCCT TTGACACCGC AACAGGCGCG GAACTTGCCT CCTGTGATTT GGGCGGTCAG
CCGGACTCCC TCGCAAAATC CAAGGACGGC GCCTTCCTGT CCATCGCAAT CGAAAACGAA
CGCGACGAAG ACCTGAATGA CGGGATCATT CCGCAATTGC CCGCAGGCAA CCTCGTTATG
ATCAACACCA CGCAAGACGG CCTGAACTGC GCCAGCATGA AGATGGTGGA TCTGACCGGT
CTGGCCGAGA TCGCAGGATC GGACCCGGAG CCAGAGTATG TCTCGATCAA CAACCTCGAC
GAGACGGTTG TGACGCTGCA AGAGAACAAC CACATGGTCG TCGTGTCCAG GGATGGTGAG
ATTCTCAGTC ACTTCTCCGC AGGCGCCGTG GACCTCGATG GCATTGATGC CACCGACGAG
CGCGGTGCAC TGATCTTTGA CGAAAGCCAG AAGGGGCGCC TGCGCGAACC TGATGCTGTG
ACCTGGATTG ACGCAGATCA CTTTGCCACC GCAAACGAGG GGGACTACAA CGGCGGTTCG
CGCGGTTGGA CCATCTTCCA CAAAGACGGC TCTGTGGTCT ATGACTCTGG CGTTTCTTTT
GAGCATGCGA TCATCCAGAT CGGCCACTAC CCGGACAAGC GTTCCGATGC CAAAGGTGTC
GAACCGGAAT CTGTGACCTT CGCAGAGTTT GACGGCACAC CTTTCGTGTT TGTCGGGGCA
GAGCGCGCTT CGGTTGTTGG CGTCTATGAC GTCACCGACC CGGCAAAACC GGTTCTGACA
CAGTTGCTGC CCTCTGGTAC CGGCCCCGAA GGCTATGTGA CCATTCCCGA GCGCGGCCTT
CTTGTTTCAG CCAACGAGAA AGACCTCCTC GAAGACGGTG GCGCACGGGC GCATGTGATG
CTCTTTGAGC TTCAGGATGG CGCAGCCACA TATCCTCATC TGACCTCGGC AGGAGCCAAA
GAGCTGATCG GCTGGGGCGC CATCTCCGGC ATGGTTGCGG ATGAAGACGG TATGATCTGG
GCGGTCAATG ATAGCTTTTA CGGCTTCCAG CCCTCGATCT TCAAGATTGA CCCCTCTCAG
ACCCCAGCGC GCATCACCGA TGTGATCCGC ATTCATCGCG CCAATGGCGA CGCTGCGCAA
AAACTCGACC TCGAAGGGAT CACGCTTGAT GGCGAAGGCG GCTTCTATGT GGCGTCCGAG
GGCCGCACGG AACGCGCGAT CCCGCACGCG ATCTATCACG TCAGCGCCGA GGGCCTGATC
AAAACCAACA AGGGTGAAAT CGCGATCCCC GCAGAGCTGC AGTCCGTCGA GAAGCGCTTT
GGCTTTGAAG GCATCACCAA GGTTGGCAAC ACGCTCTGGA TGGCGGTGCA GCGTGAGTGG
AAAGACGATC CCGAAAACCA TGTAAAGCTG GTTTCCTACA ATCTGGATAC CAAGGAATGG
GGCGCCGTTC TTTATCCAAA GGCAGCGCCG GCCACCGGCT GGGTTGGTCT GTCGGAAATC
GTGGCGCATG GCGATCATGT CTATGTGATT GAGCGCGACA ACCAGCATGA TGACCGCGCA
GTCACCAAGA AGATCTATCG CATTGCGCTC TCGGATATGG TTCCTGCCCC GCTTGGCAGC
GATCTCCCTG TCGTGACAAA GGAAGAGGTC CGCGACCTGC TGCCTGACCT GAAATCCACC
GGCGGCTATG TGCTCGACAA GGTTGAAGGT TTGGCCATCC TGGCAGACGG CACCGCTTGG
GTGTCGACCG ACAATGACGG TGTCGATGAC AGCTCTGGCG AGACGATGTT CTGGTCGTTC
AAGGTCGACT GA
|
|---|
| Protein sequence | MSLRLVCLTS ALALTAGFAQ AEKAFNRIAS FPVIKNMAEG ADQSRESSPE IIDVTADGMT
LVYTDSPLGA LGMIDITDAA NPVPKGNIAL PGEPTSVAVV GTIAYVGVNT SESYTQPSGQ
VMAFDTATGA ELASCDLGGQ PDSLAKSKDG AFLSIAIENE RDEDLNDGII PQLPAGNLVM
INTTQDGLNC ASMKMVDLTG LAEIAGSDPE PEYVSINNLD ETVVTLQENN HMVVVSRDGE
ILSHFSAGAV DLDGIDATDE RGALIFDESQ KGRLREPDAV TWIDADHFAT ANEGDYNGGS
RGWTIFHKDG SVVYDSGVSF EHAIIQIGHY PDKRSDAKGV EPESVTFAEF DGTPFVFVGA
ERASVVGVYD VTDPAKPVLT QLLPSGTGPE GYVTIPERGL LVSANEKDLL EDGGARAHVM
LFELQDGAAT YPHLTSAGAK ELIGWGAISG MVADEDGMIW AVNDSFYGFQ PSIFKIDPSQ
TPARITDVIR IHRANGDAAQ KLDLEGITLD GEGGFYVASE GRTERAIPHA IYHVSAEGLI
KTNKGEIAIP AELQSVEKRF GFEGITKVGN TLWMAVQREW KDDPENHVKL VSYNLDTKEW
GAVLYPKAAP ATGWVGLSEI VAHGDHVYVI ERDNQHDDRA VTKKIYRIAL SDMVPAPLGS
DLPVVTKEEV RDLLPDLKST GGYVLDKVEG LAILADGTAW VSTDNDGVDD SSGETMFWSF
KVD
|
|---|
| |