Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2485 |
Symbol | |
ID | 4076850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 2623777 |
End bp | 2624955 |
Gene Length | 1179 bp |
Protein Length | 392 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 638007809 |
Product | benzoate transporter |
Protein accession | YP_614479 |
Protein GI | 99082325 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3135] Uncharacterized protein involved in benzoate metabolism |
TIGRFAM ID | [TIGR00843] benzoate transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0546857 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCGCA ACCTCAAACT CTCTCACCTC GCTGCGGGAG CGATTGTTGT GCTGGTAGGA TATACCAGCT CGGTCGCCAT CATCTTTCAG GCCATCGAGG CGGTGGGGGC AACGCAGACA CAGGCCAATA GCTGGCTGGT GGTTCTGGGG CTGGGTATGG GGCTCACGAG CCTTACCCTT TCCTTGCGGT TTCGCATGCC CATCCTCACG GCATGGTCGA CACCGGGTGC CGCACTTCTG GCAACGGGAC TGGATGGGGT CTCATTGCCA CAAGCGGTGG GGGCCTTCCT GTTTTGTGGC GCACTCCTGA CCCTAACGGG GCTCACGGGC TGGTTTGAAC GACTGGCAAA ACTGATCCCC GACTCGCTTG CAAACGCGCT CCTCGCTGGG ATCCTGTTCC AGTTTGGACT CTCGGCGTTC CACGCCCTGA GCGATGATGC AGCACTCGTG GGGGCCATGG GCGTCACCTT TCTGGCGGGC AAAGTCCTTT TCCCGCGCTA TGCGATCCCG GTCGTGCTGC TCGTCGGCTG CCTCTGGGCC GCGGGGGCAG GATCGTTTGG CGACCTTGAT GCCCTCACCT TCAGCCTCAG CATGCCAGAA TTCGTGGCAC CAGAGTTCTC ACTCCCGGTC CTGATTGGTG TGGGACTGCC GTTGTACGTC GTGACCATGT GTTCGCAAAA TATGCCGGGC GTGGTGACAT TGCGCAGTGC CGGATACCCG CCCCCGGTCT CTGCCAGCCT TACCGTCACC GGGCTAGCAT CCCTGATCCT GTCACCGTTT GGTGGCTTTG CCTTCAACCT GGCCGCCATC ACGGCCGCCA TCTGTGCCGG ACCCGAAGCT GACGAGAATC CCAAGAGCCG CTATCTCTCA AGCGTGATTG CCGGGGTTCT CTACTGTCTG GTGGGCTTGG GTGGCGCGAC CGTCATCAGC CTGTTTCTCA TCGCCCCAAA GGCCCTGATC GCCACCGTTG CAGGGCTCGC GCTCCTGTCG ACCATCGGCA ACAGCCTCTC GGCCGCATTG GCTGAAAGCC GGGGGCGCGA GGCCGCGCTG ATCACCTTCA TGATGACAGT TTCGGGCGTG ACTTTTGCGG GAATCGGTGC CGCTTTCTGG GCTCTCCTGA TAGGACTTGC TGTCACCCGT CTGACGACGC TGCCACTTCC GCAACCCATC AAGACCTGA
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Protein sequence | MLRNLKLSHL AAGAIVVLVG YTSSVAIIFQ AIEAVGATQT QANSWLVVLG LGMGLTSLTL SLRFRMPILT AWSTPGAALL ATGLDGVSLP QAVGAFLFCG ALLTLTGLTG WFERLAKLIP DSLANALLAG ILFQFGLSAF HALSDDAALV GAMGVTFLAG KVLFPRYAIP VVLLVGCLWA AGAGSFGDLD ALTFSLSMPE FVAPEFSLPV LIGVGLPLYV VTMCSQNMPG VVTLRSAGYP PPVSASLTVT GLASLILSPF GGFAFNLAAI TAAICAGPEA DENPKSRYLS SVIAGVLYCL VGLGGATVIS LFLIAPKALI ATVAGLALLS TIGNSLSAAL AESRGREAAL ITFMMTVSGV TFAGIGAAFW ALLIGLAVTR LTTLPLPQPI KT
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