Gene TM1040_2485 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2485 
Symbol 
ID4076850 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2623777 
End bp2624955 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content62% 
IMG OID638007809 
Productbenzoate transporter 
Protein accessionYP_614479 
Protein GI99082325 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3135] Uncharacterized protein involved in benzoate metabolism 
TIGRFAM ID[TIGR00843] benzoate transporter 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0546857 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCGCA ACCTCAAACT CTCTCACCTC GCTGCGGGAG CGATTGTTGT GCTGGTAGGA 
TATACCAGCT CGGTCGCCAT CATCTTTCAG GCCATCGAGG CGGTGGGGGC AACGCAGACA
CAGGCCAATA GCTGGCTGGT GGTTCTGGGG CTGGGTATGG GGCTCACGAG CCTTACCCTT
TCCTTGCGGT TTCGCATGCC CATCCTCACG GCATGGTCGA CACCGGGTGC CGCACTTCTG
GCAACGGGAC TGGATGGGGT CTCATTGCCA CAAGCGGTGG GGGCCTTCCT GTTTTGTGGC
GCACTCCTGA CCCTAACGGG GCTCACGGGC TGGTTTGAAC GACTGGCAAA ACTGATCCCC
GACTCGCTTG CAAACGCGCT CCTCGCTGGG ATCCTGTTCC AGTTTGGACT CTCGGCGTTC
CACGCCCTGA GCGATGATGC AGCACTCGTG GGGGCCATGG GCGTCACCTT TCTGGCGGGC
AAAGTCCTTT TCCCGCGCTA TGCGATCCCG GTCGTGCTGC TCGTCGGCTG CCTCTGGGCC
GCGGGGGCAG GATCGTTTGG CGACCTTGAT GCCCTCACCT TCAGCCTCAG CATGCCAGAA
TTCGTGGCAC CAGAGTTCTC ACTCCCGGTC CTGATTGGTG TGGGACTGCC GTTGTACGTC
GTGACCATGT GTTCGCAAAA TATGCCGGGC GTGGTGACAT TGCGCAGTGC CGGATACCCG
CCCCCGGTCT CTGCCAGCCT TACCGTCACC GGGCTAGCAT CCCTGATCCT GTCACCGTTT
GGTGGCTTTG CCTTCAACCT GGCCGCCATC ACGGCCGCCA TCTGTGCCGG ACCCGAAGCT
GACGAGAATC CCAAGAGCCG CTATCTCTCA AGCGTGATTG CCGGGGTTCT CTACTGTCTG
GTGGGCTTGG GTGGCGCGAC CGTCATCAGC CTGTTTCTCA TCGCCCCAAA GGCCCTGATC
GCCACCGTTG CAGGGCTCGC GCTCCTGTCG ACCATCGGCA ACAGCCTCTC GGCCGCATTG
GCTGAAAGCC GGGGGCGCGA GGCCGCGCTG ATCACCTTCA TGATGACAGT TTCGGGCGTG
ACTTTTGCGG GAATCGGTGC CGCTTTCTGG GCTCTCCTGA TAGGACTTGC TGTCACCCGT
CTGACGACGC TGCCACTTCC GCAACCCATC AAGACCTGA
 
Protein sequence
MLRNLKLSHL AAGAIVVLVG YTSSVAIIFQ AIEAVGATQT QANSWLVVLG LGMGLTSLTL 
SLRFRMPILT AWSTPGAALL ATGLDGVSLP QAVGAFLFCG ALLTLTGLTG WFERLAKLIP
DSLANALLAG ILFQFGLSAF HALSDDAALV GAMGVTFLAG KVLFPRYAIP VVLLVGCLWA
AGAGSFGDLD ALTFSLSMPE FVAPEFSLPV LIGVGLPLYV VTMCSQNMPG VVTLRSAGYP
PPVSASLTVT GLASLILSPF GGFAFNLAAI TAAICAGPEA DENPKSRYLS SVIAGVLYCL
VGLGGATVIS LFLIAPKALI ATVAGLALLS TIGNSLSAAL AESRGREAAL ITFMMTVSGV
TFAGIGAAFW ALLIGLAVTR LTTLPLPQPI KT