Gene TM1040_2454 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2454 
Symbol 
ID4076936 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2596656 
End bp2597144 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content59% 
IMG OID638007778 
ProductMarR family transcriptional regulator 
Protein accessionYP_614448 
Protein GI99082294 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0859924 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCATG TGGACTTCGT TTTAGAGCAA TGGCGACGGG AACGCCCCGA CCTTGATGTC 
ACCGCAATGG GGGTGATCGG CCGGGTGAGC AGGCTTCAGC TTGAATACTC CAAGGCAATG
GCGAAAACCT TTGCCAGCTT TGGGTTGAAC GGTGCGAAGT TCGATGTTCT GGCGACCCTG
CGGCGTGCTG GGGTTCCGCA TTGTCTCTCT GCCGGAGACC TCATGAAGGC AACGATGGTG
GCTTCCGGGA CGATGACAAA CCGGATCGAT CGTCTTGAGG CGGACGGGCT GGTCACGCGT
ACGACAAATC CCAGCGATAG CCGGAGTTTC CTGATTGCGC TGACCGACAA GGGGATTGCT
CTGATCGATC AGGTCGTCGA GGCACATGTG GCCACGCAGG CTTCGCTTCT TGAGGGGCTG
TCGACGGCCG ACGTGGAAAA TCTGGCGCAG CTTTTGTCAA AGGCCCTGAC CGCCGCAGGC
CGCAGCTGA
 
Protein sequence
MDHVDFVLEQ WRRERPDLDV TAMGVIGRVS RLQLEYSKAM AKTFASFGLN GAKFDVLATL 
RRAGVPHCLS AGDLMKATMV ASGTMTNRID RLEADGLVTR TTNPSDSRSF LIALTDKGIA
LIDQVVEAHV ATQASLLEGL STADVENLAQ LLSKALTAAG RS