Gene TM1040_2448 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2448 
Symbol 
ID4076930 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2589284 
End bp2589949 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content61% 
IMG OID638007772 
ProductOmpA/MotB 
Protein accessionYP_614442 
Protein GI99082288 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.777464 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.153951 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTTTG CAAAACTCCC CGCTCTTGGC GTATTGACCG CCGCCGTTGC CCTCAGTGCC 
TGTGATGATC CTGCGTCCTA CGGTGCGCCC GGCGGGATCA ACCGCTCTCA GAACGGGGCT
ATCATCGGTG GCTTGATCGG GGCTGGCATT GGCGCTGCGA CTGCGGATGA CGACAAGGCG
GAAACGATTA TCGGGACCGC TGCGGTTGGA GCGCTTGCGG GCGGGCTGAT TGGTCGTGAA
CTCGACAAGC AGGAGGCCGA GCTGCGCCAG AGTCTCGACA ATGACTCAAT TTCGATCGTC
AATACCGGCG ATCGCCTGAT CGTCTCGCTG CCCAATGATC TGACGTTTGC CACCGACAGT
GCAGCGATCT CCTCGGTGGT GCGCAGCGAC CTGCGCAAGG TGGCGGGTAG CCTGCAGCGC
TATCCCGGCA GCATCGTGCA AGTTATCGGT CATACGGACA GCGATGGGGC TGCGTCTTAT
AACTACAGCT TGTCCGAGCG CCGTGCCAAC GCCGTCGCGG ATGAGATTGC AGCAGGCGGC
GTGTCCTACG GCCGTATGCG GATCATTGGG CGCGGCGAAG ACCAACCCGT TGCCAGCAAC
CTCACGCCCG AAGGCAAAGC GCGTAATCGG CGGGTTGAAA TCGTGATCAT CCCGCAAGCA
AGCTGA
 
Protein sequence
MSFAKLPALG VLTAAVALSA CDDPASYGAP GGINRSQNGA IIGGLIGAGI GAATADDDKA 
ETIIGTAAVG ALAGGLIGRE LDKQEAELRQ SLDNDSISIV NTGDRLIVSL PNDLTFATDS
AAISSVVRSD LRKVAGSLQR YPGSIVQVIG HTDSDGAASY NYSLSERRAN AVADEIAAGG
VSYGRMRIIG RGEDQPVASN LTPEGKARNR RVEIVIIPQA S