| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2422 |
|---|
| Symbol | |
|---|
| ID | 4076904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2562766 |
|---|
| End bp | 2563215 |
|---|
| Gene Length | 450 bp |
|---|
| Protein Length | 149 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 638007744 |
|---|
| Product | CopY family transcriptional regulator |
|---|
| Protein accession | YP_614416 |
|---|
| Protein GI | 99082262 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3682] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0381488 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.701742 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCACT GCGACTTCTC CCCGGTCGCG GCCCGAACAG CAAAGCTTGG AAAAATGCGC
AAGAAACAGA CCCACTCCCT TCTGACCGAG GTTGAACTCG AATTCATGAC CGTGGTCTGG
GATCTCGAAA AAGGGTCCGT GCGCGACATT CTGGCTGAAC TGAACAAAGT ACAAGAGCGC
GCCTACACTT CTGTGGCCAC GGTCCTCAAG ATCATGGAGC AAAAGGGCTT TTTGACCAGC
GAGCGGGTTG ACCGTTCCCT TGTTTATCGC CCTGCAATCC CGAAGGCCGA GTATCAGAAA
ACGTCGCTCA AAAACCTGTC GAGCAAGCTC TTCAACGATG CTCCCGCGGC CCTCGTGGCG
CGGTTGGTCG ATGATGAGGA TATCACTGAT GCCATGCTTG AGGAAATGCG GGCCTTGCTG
AACGAAAGGC TGGGGGACAA TGAAAGCTGA
|
|---|
| Protein sequence | MDHCDFSPVA ARTAKLGKMR KKQTHSLLTE VELEFMTVVW DLEKGSVRDI LAELNKVQER
AYTSVATVLK IMEQKGFLTS ERVDRSLVYR PAIPKAEYQK TSLKNLSSKL FNDAPAALVA
RLVDDEDITD AMLEEMRALL NERLGDNES
|
|---|
| |