| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2416 |
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| Symbol | |
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| ID | 4076742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2556474 |
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| End bp | 2558207 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638007738 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_614410 |
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| Protein GI | 99082256 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000012875 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGAAGT ATCTTTTGAC CGCAGTTGCA GCCGGGGCTG TAATTGCGGC AACGGGTTCG
TATGCCGATG AGGCAGCGGC CCAGAAATGG ATCGACGAGG AGTTTCAGCC GTCGGTTCTG
AGCAAAGCAG AACAACTTGC CGAGATGCAG TGGTTCATCA ACGCCGCCGA GCCTTACAAG
GGCATGGAGA TCAACGTACT GTCCGAGGGC ATCCCCACGC ACAGCTACGA ATCCGAGGTG
CTGACCAAGG CGTTTGAGGA AATCACCGGC ATCAAGGTGA ACCACCAGAT CCTGGGCGAA
GGCGAGGTCG TTCAGGCCGT GCAGACCCAG ATGCAGACCA AGCGGAACCT CTATGACGCA
TACGTCAACG ACTCCGACCT GATCGGCACG CACTCGCGCC TGCAGCTCGC TTACAACCTG
AGCGACATGA TGGAAGGCGA CTTCAAGGAT GTGACCAACC CCGGTCTCGA CCTTGACGAT
TTCATGGGCA CCCAGTTCAC CACTGGCCCC GATGGCGACC TCTACCAGCT GCCCGACCAG
CAGTTTGCGA ACCTCTACTG GTTCCGCAAA GATTGGTTCG ACCGCGAAGA TCTGAAGGCC
GCCTTCAAAG AGAAATACGG CTACGAGCTG GGTGTTCCGG TCAACTGGTC CGCCTATGAA
GACATTGCCG AGTTCTTCTC TGAAGATGTG AAAGAAATCG ACGGCACCAC CATCTACGGC
CACATGGATT ACGGCAAACG CGCGCCTGAC CTCGGCTGGC GGATGACCGA TGCGTGGCTC
TCCATGGCCG GTGCGGGCTC CAAGGGTGAG CCGAACGGTG TTCCGATCGA CGAATGGGGC
ATCCGTATGG AAGAAGGCAC CTGTAACCCG GTGGGCGCAA GCGTCACCCG CGGCGGTGCT
GCAAACGGTC CGGCAGCAGT CTATGCGATC CGCAAGTGGG ACGAATGGCT GCGCAAATAC
GCACCTCCCG GTGCCGCGTC TTATGACTTC TACCAGTCTC TGCCCGCACT CGCTCAAGGC
AACGTCGCGC AGCAGATCTT CTGGTACACC GCCTTTACCG CAGACATGGT GAAGCCGAAG
TCCGAAGGCA ACAACACCGT CGACGACAGC GGCACCCCGC TGTGGCGCAT GGCACCGAGC
CCGCATGGCC CCTACTGGGA AGAAGGCCAG AAGGTTGGCT ATCAGGACGT GGGCTCCTGG
ACCTTCCTCA ACTCCACCCC GCTGGACCGC GCACAAGCCG CATGGCTCTA TGCTCAGTTC
GTCGTCTCCA AGACCGTCGA CGTGAAGAAG TCCCACGTGG GTCTGACCTT CATTCGCGAC
AGCTCCGTCA ACCACGAGAG CTTCACCGAG CGTGCGCCCA AACTGGGTGG TCTGGTGGAA
TTCTACCGTT CGCCCGACCG GACTGCATGG TCCCCGACCG GCATCAACGT GCCTGACTAT
CCCAAGCTGG CGCAGATCTG GTGGCAGCAG ATTGGTGACG TGAACTCCGG TGCCTTCACC
CCGCAAGAAG CGATGGATCG TCTGGCGCAG GAAATGGACA TCACCATGGG TCGTATGCAG
CGTGCAGACG AGCAGGCGAA TGTCTATGGC GGCTGCGGCC CGCGTCTGAA CGAAGAAAAA
GACGCGGAGT GGTGGTACGC CAATGGCGGC GCCAAGCCGA AGCTGGAGAA CGAAAAGCCG
CAAGGCCAGA CCGTCAACTA TGACGAGCTG GTGGCGCGCT GGGCCGCGAA CTGA
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| Protein sequence | MRKYLLTAVA AGAVIAATGS YADEAAAQKW IDEEFQPSVL SKAEQLAEMQ WFINAAEPYK
GMEINVLSEG IPTHSYESEV LTKAFEEITG IKVNHQILGE GEVVQAVQTQ MQTKRNLYDA
YVNDSDLIGT HSRLQLAYNL SDMMEGDFKD VTNPGLDLDD FMGTQFTTGP DGDLYQLPDQ
QFANLYWFRK DWFDREDLKA AFKEKYGYEL GVPVNWSAYE DIAEFFSEDV KEIDGTTIYG
HMDYGKRAPD LGWRMTDAWL SMAGAGSKGE PNGVPIDEWG IRMEEGTCNP VGASVTRGGA
ANGPAAVYAI RKWDEWLRKY APPGAASYDF YQSLPALAQG NVAQQIFWYT AFTADMVKPK
SEGNNTVDDS GTPLWRMAPS PHGPYWEEGQ KVGYQDVGSW TFLNSTPLDR AQAAWLYAQF
VVSKTVDVKK SHVGLTFIRD SSVNHESFTE RAPKLGGLVE FYRSPDRTAW SPTGINVPDY
PKLAQIWWQQ IGDVNSGAFT PQEAMDRLAQ EMDITMGRMQ RADEQANVYG GCGPRLNEEK
DAEWWYANGG AKPKLENEKP QGQTVNYDEL VARWAAN
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