| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2413 |
|---|
| Symbol | |
|---|
| ID | 4076739 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2553324 |
|---|
| End bp | 2554130 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638007735 |
|---|
| Product | 2-dehydro-3-deoxygalactonokinase, putative |
|---|
| Protein accession | YP_614407 |
|---|
| Protein GI | 99082253 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3734] 2-keto-3-deoxy-galactonokinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0903346 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCAGC TTGCCGAAAC CTGGTTTGCC TTTGACCAAA CCCATCGTCC CGCTCGATTG
TGGCGGATGC GCAATGCCTC TGCGGATGGG ACGGTCCACA TTGCTCACAG CCTCGACGAG
GCCCGCGAGA TCGCGCAGGA CGCCTCACTT GTGACCCATG CTGCCTCCGA CGGGTTGGCG
CTGACCCTGC CAGCGGCAAC CGCAGATCTG AGGCTCGCAC CCAAGGACGG TGTCTTGCGC
CTTGCGGCTA TGGCGCAGAC CAAACCGCAC GCATGGCTGA GCGCTGCCTG CGTTCGCATC
AAGGGCTTCC TGGAACTCAA CAAGGACTGG GACGGCGTGT TATGCTTGCC GGGATTTGAC
ACAACCTACT GGGTGCTCAT CAGCGCCAAT GAAGTGGTGA GCGCCCTCGG CTTTGTAACC
TCACCTCTGG TGGAGGCGCT CTCTCCCGTT GCTCTGGATA CCGAGATCGA TCGAGATGCG
CTTTTGGCCC CGCTTCAGGA TGTCATGTCA AAGCCAGAGG CCCTTGCCCT GCGTCTCGCA
GAGAGCCGCA GCCAATGGCA GAATACGGCG CTGAATGATG CGGGCGCGCA CAGTCAGATA
TGGGGTGCAG CGCTTGGCGC GGAGCTTGCG GCAGCGCGGG CCTATTGGCT CGGCCAGAAC
ATCGCGTTGA TTGCGCCCTC TGCGCTGACC GCGCCCTACA AGGCAGCGCT TGCCAGCCAA
TATGTCCCCT TCACTGAAGC CGACGAAGCC CAGATGACCC TTAAGGGCTT CGCCTCGGCC
TACGCCGCCT ACACCCAATC CACCTAA
|
|---|
| Protein sequence | MSQLAETWFA FDQTHRPARL WRMRNASADG TVHIAHSLDE AREIAQDASL VTHAASDGLA
LTLPAATADL RLAPKDGVLR LAAMAQTKPH AWLSAACVRI KGFLELNKDW DGVLCLPGFD
TTYWVLISAN EVVSALGFVT SPLVEALSPV ALDTEIDRDA LLAPLQDVMS KPEALALRLA
ESRSQWQNTA LNDAGAHSQI WGAALGAELA AARAYWLGQN IALIAPSALT APYKAALASQ
YVPFTEADEA QMTLKGFASA YAAYTQST
|
|---|
| |