| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2409 |
|---|
| Symbol | |
|---|
| ID | 4076735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2548100 |
|---|
| End bp | 2549374 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638007731 |
|---|
| Product | lipopolysaccharide biosynthesis |
|---|
| Protein accession | YP_614403 |
|---|
| Protein GI | 99082249 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.352526 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTCTA TCTATTCCAT TGCAGATTTC ATCGACATGC TGCGCCGCCG TGTGTCGCTG
ATCGTTGTCG TCACATTTCT GGGCTGTGTG GTGTCGGTCT GGCTGGCGCT GCAGAAGCAG
CCGATCTATT CCAGCACCGA AGTGATCCAG ATTACCCGTC CAAAGATTGC CGGAGATCTG
GCGCGCTCGA CTGCGGAGGG GTCCTCTGCA CGACGTATCC AATTGATCGA ACAACAGCTG
ATGGCGCGCG GAACGATCCT AGAAATCGTG GATCAGCTTG ACCTCTTTGC GGACCGTCCC
GGGCTTCTGG ATTCCGAAAT TGTCCCCCTG ATGCGCAACT CTGTTTCTTT GATGGGGACC
GCCGCGGCCC GCGAAGGCGG GTCCGACGAT GGCGCGATCT CGGTGCTTAC GATCACCGCG
AATATGCCGA CCCGCGAGCA AGCGCAGGCC GTCGCGCGCG AATTTTCCAA GCGCACCATT
GCCCTCAGCC AGAACACCCG GCTCGCCGAG GCGCGCGAAA CCTTGCTCTT TTTCAATGAA
AAAGAAGCGG CATTGGTGCG TGACATCACG GCGCTTGAGG AAGAGATTGC CAACTTCAGG
CACGAGAACG CCGTGACCTT GCCCGGTGCA ATCGAGATGC GAGGCGCGGA AATTACGGCG
ATCAATGAAA GCCTGCTGGA ACTCGCGCGA CAAGAGATCG AATTGCGCAA AGGTGCTGAG
GAGGCCGAGG CAACACAACG TGAAGCCTAT GCGCGCCGGG TTCGCGAAGA GTTCGACGCC
CAGCTCGAAA GCTTGACAGC GCAGCGCCAG CTGCTTGTGG ATCGCCGCGC CGAACTGGAG
GCGTCTCTCG AGCTCACCCC GGACGTGGAT CGCCAATTGG CCAGCTATGA GCGGCGTCAA
CAGCAGATGC AGTCCGAGCT TGAAGTCATC ACCGCGCGTC GCGCCGAGGC CGAGGTCGGG
TTCCGACTGG AGACCGCCAG TCAAGGCGAG CGTCTGCGGG TGATCGAGCC CGCACCGCTG
CCGGATTATG CGATGGGCGG TGGCCGCAAG TCTTTGGCGA TCAAGGGCGC CCTTGCGAGC
TTTGTCTTGG GGGTTCTTGC GGCCTTTGCC CTAGACTTGC GCCATCCGGT TCTGCGGTCG
AGCGGGCAGA TGAAGCGGGA AACCGGCCTG TCCCCGGTGG TGACGATCCC GGTTCTGACG
ACGCGCAAAA AAGGTCTGTT TGCACGCCTC TTTGCGCTGG GCGGACGCGG CACGGAACGG
CACGCGCGTA GCTAG
|
|---|
| Protein sequence | MASIYSIADF IDMLRRRVSL IVVVTFLGCV VSVWLALQKQ PIYSSTEVIQ ITRPKIAGDL
ARSTAEGSSA RRIQLIEQQL MARGTILEIV DQLDLFADRP GLLDSEIVPL MRNSVSLMGT
AAAREGGSDD GAISVLTITA NMPTREQAQA VAREFSKRTI ALSQNTRLAE ARETLLFFNE
KEAALVRDIT ALEEEIANFR HENAVTLPGA IEMRGAEITA INESLLELAR QEIELRKGAE
EAEATQREAY ARRVREEFDA QLESLTAQRQ LLVDRRAELE ASLELTPDVD RQLASYERRQ
QQMQSELEVI TARRAEAEVG FRLETASQGE RLRVIEPAPL PDYAMGGGRK SLAIKGALAS
FVLGVLAAFA LDLRHPVLRS SGQMKRETGL SPVVTIPVLT TRKKGLFARL FALGGRGTER
HARS
|
|---|
| |