Gene TM1040_2403 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2403 
Symbol 
ID4076729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2540264 
End bp2540974 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content61% 
IMG OID638007725 
Product4'-phosphopantetheinyl transferase 
Protein accessionYP_614397 
Protein GI99082243 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG2977] Phosphopantetheinyl transferase component of siderophore synthetase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.722243 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGCAC CCCGACCCGC GCCACAGGAT ATCTCGCAGC AGCGCCAGCA CGCGCTGCGC 
CAACTCTTGT CAGATCCGAT CGCAATCGCC ACCTGCGACC CACATGGTGA CCTCCCGGAA
CCCTTTGCCG AAGAAAGCGC CTGCTTGTCG CCCAATGCCG TGGAAAAGCG GCGGCGCGAA
TTTGCCGCCG GGCGCGCCTC GGCGCATCAG GCGATGCGCG CGTTGGACCA ACCCTGTGCG
CCGATCCTTA TCGGGCCGAA ACGCGCGCCT CTTTGGCCAG AGGGTCTGAC CGGCAGCATC
ACGCATTGTG CCTCCTGCGC CATGGCGGCG GTTGGGTTTA CACGCGACTT TACCGGCATC
GGCGTCGATG TCGAAGAGGA CACCCCTCTG TCGCGCGACC TGTGGGACAG CATCGCAAGC
CCCGCCGAAC AGACCTGGAT CGCTGCACAG CCTGACCCCG GCCAAGCTGG CAAACTGCTG
TTTTCTGCGA AAGAAGCCGC CTACAAGGCT CAGTATTCCC GTTCAGAGCG CTTTTTCGGC
TTCAGTGGGC TCGAACTTGT CTTTGACACA AACAAAGGGC AGTTCACGGC CTGTTTCACC
TCGGATCAAT TGCCTTACCG CAGCGGAGAT CTCCTCCGGG GTCGATTTGC GATCACCACT
GGGGTAATCA TCACCGCGGT TGAAATCTCA AAGAATGAGC TGTGCCCATG A
 
Protein sequence
MIAPRPAPQD ISQQRQHALR QLLSDPIAIA TCDPHGDLPE PFAEESACLS PNAVEKRRRE 
FAAGRASAHQ AMRALDQPCA PILIGPKRAP LWPEGLTGSI THCASCAMAA VGFTRDFTGI
GVDVEEDTPL SRDLWDSIAS PAEQTWIAAQ PDPGQAGKLL FSAKEAAYKA QYSRSERFFG
FSGLELVFDT NKGQFTACFT SDQLPYRSGD LLRGRFAITT GVIITAVEIS KNELCP