| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2400 |
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| Symbol | |
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| ID | 4076726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2528233 |
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| End bp | 2534685 |
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| Gene Length | 6453 bp |
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| Protein Length | 2150 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638007722 |
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| Product | beta-ketoacyl synthase |
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| Protein accession | YP_614394 |
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| Protein GI | 99082240 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3321] Polyketide synthase modules and related proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.586894 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAAGA AGACACCAAA CGACGCGTTC AGCCCGGACG ATATCGCCGT AGTCGGCATG
TCGGTCGCTT TGCCGGGGGC AGCATCGGTT CAGGAATACT GGACCAACCT GCGCGATGGG
ATCGAGTCGA TCCAGAGCGT CGATGAAGAC AGTCTTCTTT CCGCTGGCGA GCGGGCGGAG
ACGCTGCGCG ATCCCAATTA TGTCCCCTCA TGCGCGCCGC TAGATGGATT TGATGAATTT
GATGCGGAGT TCTTTGGGTT TTCACCCAAA GAGGCGGCGA TCCTGGACCC CCAGCATCGC
AAGTTTCTCG AGGTGGCTTG GGGCGCAATG GAGGATGCGG GGCATACCCC AGAGAGCCTC
AAAGGTCAGG TGGGCGTCTA TGCGGGCTGC GGCATGGGCA GTTATTTCTA TTTCAACATC
TGCTCGAACC CAGATCTGGT GGATGACGTT GGCATGTTCC TTTTGCGCCA CACCGGCAAC
GACAAGGACT TTCTCACCAC CCGTGTGAGC CATGTCTTTG ATCTAAAAGG GCCATCGGTC
AACGTTCAGA CCGCTTGTTC GACCTCGCTG GTTGCGATCC ATTACGCCGC CGAGGCGCTG
CGCAATGGCG AGTGCGACAT GGCTCTGGCG GGGGGGGTGA CGATCGAGCT CCCGCAGGGG
CGCGGCTACC TCTACAAGGA AAACGAAATC CTGTCGCCTG ATGGTCATTG CCATGCCTTT
GATCATCGCG CTCAGGGCAC CGTCTTTGGC TCGGGTGCTG GGGCGGTGGC GCTCCGTCGA
CTGGGCGATG CAGTCGCGGA CGGCGACCAT ATCTGGGCCG TGATCAAAGG CTCTGCCATA
AACAATGACG GCGCCGCCAA GGCCGGTTAT CTGGCGCCCT CGGTAGACGG GCAGTCCGCC
GCCGTGCGGA AGGCGCTGAC AGCGGCGCGC GTGAATCCCG AGACCATAGA CTATGTGGAA
TGTCACGGCA CCGGCACCTA TATCGGCGAC CCCATCGAGG TGGCCGCCCT CACAGAGGCC
TATCGCGACG GCACGGACGC CAAGGGCTAT TGCCGGATTG GGTCGGTCAA AACCAATATC
GGTCATCTCG ATACCGCCGC TGGCGTGGCG GGTTTTGTAA AAACCGCGCT GGCACTGGAG
CACAAAACCC TGCCGCCCTC GCTTGGCTTT GAGAAGCCGA ACCCAACAAT CGATTTTGAA
ACCTCGCCTT TTCAGGTCAA CGACGCATTG CGCCCATGGA TGTCCCACAA GGGCCCGCGC
CGCGCAGCCG TGAATGCACT TGGCGTTGGG GGCACCAACG CGCATGCCAT CCTCGAAGAG
GCCCCGGTGC GCGCTGCCTC CGAGGAAAGC GATTTCCCGT TTCAGGTGCT CTGCCTCTCT
GGCCAGACCA AAGCCGCGCT CGAGGCCAAC ACCCAGAACC TGATCGCCTA TCTGCGCGCC
AATCCCGAGG TTGAACTGGC CGATGTGGCC TTTACGCTCA AGGAAGGCCG CAGAGGGTTC
GCCAAACGCC GCGTTGTGGT GGCCGAAACC GCCACCGAAG CCGCTGACAA GTTGGAAGCG
GCCAATCCAC GCGAGGTCTT CACCCATGAT CACCTCGGTC CGCAGCCCGA AACCGTCTTT
ATGTTCCCCG GCGGTGGAGC GCAGTTTGCG GGTATGGCGC GTGATCTCTA TGAGACCGAA
CCAGTCTTTG CGGATTGGAT GGATCAGGGT CTGGATCACC TGGAAAAGAG CCTCGATTTT
GACATCCGCG CGCTGTGGCT GCCTGAACCG GGTGAAGAGG CCAGCGCCAA TGCGGCCCTC
TTGAAACCTT CGGTGCAACT GCCACTCATT ATGATCGTGG AATACGCGCT GGCGCAGCTA
TGGATCAGCT GGGGCGTTCG GCCCGCCGCC ATGGTGGGGC ACTCGATGGG CGAAAATACC
GCGGCCTGTC TCGCGGGTGT AATGCGCTTT GAAGACTGCA TCGACCTCGT ACAACTGCGC
GGGCGCTTGT TCGACACGAT CGAGCCCGGT GGCATGTTGT CGATCTCGCT GCCGCTGGCA
GAGGTGGAGA CGCTGGTGGG CGAGGATCTG GACATCGCCA GCGTCAACGC CCCGGAACTC
ACCGCTGTCT CCGGCCCCAA TGATCGCCTC GACGCCCTGT CCGAGCAACT TCGGGCGCGC
GGCGTGGAGT TCCAGCGCAT TCCCATCGAT ATTGCCGCCC ACAGCCGCAT GCTCGAACCT
ATCCTCGGCG CATATGGTGA TTTCCTGCGC CGCCTTGATC TGCAACCTCC GACCCTTCCG
GTGATGTCCA ACCGCACCGG TCAGCCGCTC ACGGCGGAAC AGGCGATGAG CGCGGACTAC
TGGGTCGAGC AGCTGCGCAA TACCGTGCGC TTTGCGGATT GCATCGAAAC GCTCGGGGCC
ACCAAGGGAC GCGTCTATCT TGAGGTAGGT CCCGGCAAGG CGCTGAGCGC TCTGGCTCAG
ATGTCTCCTG AAGTGGCACC GGGGCAGGTG CTGAGTTCTC TGCGTCACCC CGATCAAGAC
ATTGCAGATG ATGCCTATTT CTTTGGCGTA ATCGGGCGCC TGTGGGCTTG CGGCGTCGAA
GCGGATTGGC CGCAGGTCTG GGGCGACGCG CAGCGCAACC GCCTGAGCCT GCCCACCTAC
GCGTTCCAGC GCAACCGATA CTTCATCGAG CCGGGGAAAT CGGTGCAGCA ACCCGAAGCC
GCCCTGCCCG AACACCACAA AGACATGGCC GACTGGGGCT ATCGCCCGGC CTGGCGGCCA
CGGCTGGCCG ATTGTGCACT CGACATTGAA AACGACCTCG CGCTTGAGCC GCACAGCTGG
CTCATTTTCG AAGATACCAC GGGACAGGGG GCCGCCTGCG CCGAGGCGCT TCTCGCAGCC
GGGCACCGCG TCGCGCGCGT GCGCGCAGGT GATACATATG CGCAGCTTGC ACCCGATCTC
TACCAACTGG CTCCCGAGGA GGGGCGATTT GGAACCGAAG CGCTGCTGGC GGATCTGACC
GAGGCGGGCT ATTTCCCAGA TCGGATCGCA CATTTCTGGC TGGTCACGGA AACTGAAGAG
TACCGGCCGG GCTCTTCGTT CTTTGACCGC AACGTTGAGA TGGGGCTGAT GTCCCTTACG
GCATTAGGTC AGGCGCTGGC GCAGGCCGAT TTGCCGCACT CCGTGCATCT GAGCGTGATG
ACCACTGGTG CCATGCAGGT CCACGGCGAG TCCCTGCCCT ATCCTGAAAA GGCGATGATC
TCCGGGCCTG CCGGGATCAT CCCGCGCGAG ATCCCAGGTG TCACTGTCGC CACTTGCGAC
ATCGAATTAC CGCAAGCTCC AACCGGCTGG AACGCGCTCC TTGGGGGGTC AGCCCCTGCA
TGCATCACAA CGCGGCTCCT CGAAGAGCTG CTTGCCATGC CAGGCAACCA CAGCGCTGCT
TGGCGCGGTG AAAAACGCTT TGAGCTTGAC TACCGCCCGC TTCCTCTCTC GGAGCCGGAC
GCACGTGATC TGCCGCTCAA GAAAGGTGGC CATTACCTCC TGACGGGCGG CTACGGCGGC
ATTGGGCTAA CGATTGCGGA ACATCTGATG CGCACTTACG AGGCGCGAGT GACGCTTTTG
TCGCGCGAAA CGCTGCCGCC CCGCGCAGAC TGGGGCAGAG AGCTGCGCCG CCGCAGCCCG
TCCGATCGGA TCGCGCAGCG CATCCGCGCG GTTCAGAAAC TGGAGGCCAC CGGACGCGGA
GAGGTGCTGA CGCTGAGCGC AGATGTCTGC AATCTTCAAG AAATGCGGGA TGCTGCCGAG
GCCGCCTCTG CTGCCTTTGG TCCGATCTCC GGCCTCTTCC ATGGCGCCGG CTTTATCGCC
GATGCGCCCC TCTTGGCCAA AACCGACCGG CAGATCGCTG AGGTGCTCGC GCCGAAAGTG
AGTGGTTTGC GGGTTCTGGA TCAGGTTTTC CCGGATGGCA CCATTGATCT CATGGTGCTG
TTCTCATCCT CGTCGACCGT CACGCGCCCC GCAGGGCAGG TAGATTATGT CGCAGCCAAT
GAGTTCCTCA ATGCATGGGC AAAATCCCGA CAGGGCGCTC AAACCCACGT GGTGGCGCTG
GACTGGGGGA TCTGGGCGGA TACCGGCATG GCAGCGGACG CCATGGCCGC CCGGCGCGGC
AGCGCTGCGC CTTCGGAACC ACAGCCCTCA GAGGCCGCGC TCTGGCAAAC CCAAGGATTT
GATCGGAACG GCACGCCCAT ATTCAAAAGC CGCTTTGAGG CGGACAAACA CTGGCTCCTC
GATGAGCACC GCACCAAAGA TGGCAGGGCC CTCATCCCCG GCACGGGCAA TGTTGAGTTG
ATAGCCGAAG GGCTGACCGC GCTCGACGTC TCGCCACCAT TTGAAATCCG CGATCTCTAT
TTTTTGCAGC CCTTTGTGGT TGAGGACGGC AGTCCGCGCG AAGCAGTGAT GCATCTGGCT
CCCACTCAAG GCGGCTATGA CGTCCAGATC CACGCCGAAA CCTCGGAAGG ATACGCGCGC
ACCGCAGAGG CCGAAGTCGT GTCGCGTGCG CTGGACGCAG AGACCCCGCA GCTTTCGTTG
GAGGCCATTG CCGCCCGCTG CACACCCAAA GCCGCAGATC CGGCAAGCGA GCGCCTGACA
TCGCCACAGG AGGCAAATCT GCGCTTTGGT CCACGGTGGC ATGTGCTGCA ATCCATGGCC
CTTGGTCGCG ATGAGGGGCT CGCCAAACTG TCGCTGCCGG ATCTGGCCGA CCAAGACGGG
ACACTTCTAC ACCCGGGCTT GCTGGACCTT GCAACCGGCT GGGCCATCGA ATTGGCACCG
GGATATGAGC CAAGCACGCT CTGGGTACCG GTGTCTTATG GATCGATCCG GGTCCACGCG
CCCTTGGTGA AAACCGTCTT TAGCCACGTG CGCCTTGCGC AAGAAGGCGG CGAACGCGGC
TCCGTGCTCT TTGACATCAC CCTCTGCGAC GAGACCGGGA ACGTGCTGGT CGAGATCTCG
CATTTCCGCA TGCAACAGCT GAGCGGCGGC TTTGATCTCT TGCCCGCTCG CACCGACACC
ACAGCCGCCG CGCTTGGCCT CACCTCGGAG GCGGAGATAC AGCCCCTTTC GCCGGATGAA
CGTCGTTTGC TGGCCAATCT CGAGAATGGC ATTCGCAGTG AAGAGGGTGG CGCAGCGCTC
GAGCGCGCAC TCGCCGCAAA GCAGCCTCAG GTCATTGTCT CTTCGCTCGA TCTTTCGGCC
CTGCGCGCGC AGGCGGAAAA CGGGGCTGAA ATCACGTCAG AGAGCGAAGG TCAGAGCTTT
GAGCGCCCAG ATCTGGATAC GGATTATGTG GCGCCCAGCA CCGAAACCGA AGAAACGCTC
GCGGGGCATT TTGCAAGCCT TCTGGGCCTC TCGCGCGTTG GTGTAGAGGA CAGCTTCTTT
GATCTTGGGG GGCATTCCCT GATCGCAGTC CGTCTCTTTG CTCAGATCAA ACGCAGCTTT
GGGGTGGAGT TTGCGATGTC AGTCCTGTTC GACGCCCCCA CTGTCGGAGC CCTGGCGCAA
CGCATTGATA AGGAGGCCGG CCCTCCGGCG GTCACGGTCA CATCTACCAG CGACACGGAA
ACCACCACCC CGCAGAGCTA CAGTCACCTG GTCCGCCTTG CGCCCGGCGA AAATGGCGAA
GCGGCGCCGA TGTTCATCGT TGCGGGCATG TTCGGAAACG TTCTGAACCT GCGCCATCTT
GCTCAAATCC TGGGAGAAGA TCGCCCTGTC TATGGCCTGC AGGCGCGCGG GCTGATTGGC
GCGGATGAAC CCCATGAGCG GATCGAAGAC GCGGCGCGCG ACTATATCGC TGAGATGCGG
CTGGTGCAGC CGGAGGGGCC CTATCTGATT GGTGGTTTCT CGGGCGGCGG CATCACCGCC
TATGAAATCG CGCAACAGCT CAAGGCCTCC GGCGACGCTG TGGACGCACT TGTGCTTCTT
GATACGCCGC TTCCGGTGCG CCCCGACCTG AAACCGATCG ACAAGACCCT GATCAAGATC
GCCGAAATCC GCGCCAAAGG GCCCGGGTTT GTGACCGAAT GGGCGCGCAA CCGCATTGCC
TGGGAAATCC GCAAACGCCA GAGCCGCCCG TCCGAAGGGG CAGAGAATGC AGGCTTCAAC
AATCGTAAGA TCGAATTGGC ATTTTTGCGC GCTGTTGCCA GCTACACTGT GCAGCCCTGG
AATGGACCGG TCACGCTCTA TCGCCCGGTG CTGGACCAGC ACTGGAAGGT CTCTGGCGGC
CAGTGGGTGA GCCGCGAGCG CGAGTATGTT TATCCGGACA ATGACTGGAA GCAGTTCGCT
CCTGCGCTGG ATGTATGCGA GGTGCCCGGC GATCATGATG GCATGGTGCT AGCGCCCAAC
GTCAGCGTTC TTGGCAAGAA AATCCGCGAT CTGCTGGCGG CAACCAACAG TCGCGCGACC
CGGCCTCACG ACAGCTCTAA GGCGGCGGAG TAA
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| Protein sequence | MDKKTPNDAF SPDDIAVVGM SVALPGAASV QEYWTNLRDG IESIQSVDED SLLSAGERAE
TLRDPNYVPS CAPLDGFDEF DAEFFGFSPK EAAILDPQHR KFLEVAWGAM EDAGHTPESL
KGQVGVYAGC GMGSYFYFNI CSNPDLVDDV GMFLLRHTGN DKDFLTTRVS HVFDLKGPSV
NVQTACSTSL VAIHYAAEAL RNGECDMALA GGVTIELPQG RGYLYKENEI LSPDGHCHAF
DHRAQGTVFG SGAGAVALRR LGDAVADGDH IWAVIKGSAI NNDGAAKAGY LAPSVDGQSA
AVRKALTAAR VNPETIDYVE CHGTGTYIGD PIEVAALTEA YRDGTDAKGY CRIGSVKTNI
GHLDTAAGVA GFVKTALALE HKTLPPSLGF EKPNPTIDFE TSPFQVNDAL RPWMSHKGPR
RAAVNALGVG GTNAHAILEE APVRAASEES DFPFQVLCLS GQTKAALEAN TQNLIAYLRA
NPEVELADVA FTLKEGRRGF AKRRVVVAET ATEAADKLEA ANPREVFTHD HLGPQPETVF
MFPGGGAQFA GMARDLYETE PVFADWMDQG LDHLEKSLDF DIRALWLPEP GEEASANAAL
LKPSVQLPLI MIVEYALAQL WISWGVRPAA MVGHSMGENT AACLAGVMRF EDCIDLVQLR
GRLFDTIEPG GMLSISLPLA EVETLVGEDL DIASVNAPEL TAVSGPNDRL DALSEQLRAR
GVEFQRIPID IAAHSRMLEP ILGAYGDFLR RLDLQPPTLP VMSNRTGQPL TAEQAMSADY
WVEQLRNTVR FADCIETLGA TKGRVYLEVG PGKALSALAQ MSPEVAPGQV LSSLRHPDQD
IADDAYFFGV IGRLWACGVE ADWPQVWGDA QRNRLSLPTY AFQRNRYFIE PGKSVQQPEA
ALPEHHKDMA DWGYRPAWRP RLADCALDIE NDLALEPHSW LIFEDTTGQG AACAEALLAA
GHRVARVRAG DTYAQLAPDL YQLAPEEGRF GTEALLADLT EAGYFPDRIA HFWLVTETEE
YRPGSSFFDR NVEMGLMSLT ALGQALAQAD LPHSVHLSVM TTGAMQVHGE SLPYPEKAMI
SGPAGIIPRE IPGVTVATCD IELPQAPTGW NALLGGSAPA CITTRLLEEL LAMPGNHSAA
WRGEKRFELD YRPLPLSEPD ARDLPLKKGG HYLLTGGYGG IGLTIAEHLM RTYEARVTLL
SRETLPPRAD WGRELRRRSP SDRIAQRIRA VQKLEATGRG EVLTLSADVC NLQEMRDAAE
AASAAFGPIS GLFHGAGFIA DAPLLAKTDR QIAEVLAPKV SGLRVLDQVF PDGTIDLMVL
FSSSSTVTRP AGQVDYVAAN EFLNAWAKSR QGAQTHVVAL DWGIWADTGM AADAMAARRG
SAAPSEPQPS EAALWQTQGF DRNGTPIFKS RFEADKHWLL DEHRTKDGRA LIPGTGNVEL
IAEGLTALDV SPPFEIRDLY FLQPFVVEDG SPREAVMHLA PTQGGYDVQI HAETSEGYAR
TAEAEVVSRA LDAETPQLSL EAIAARCTPK AADPASERLT SPQEANLRFG PRWHVLQSMA
LGRDEGLAKL SLPDLADQDG TLLHPGLLDL ATGWAIELAP GYEPSTLWVP VSYGSIRVHA
PLVKTVFSHV RLAQEGGERG SVLFDITLCD ETGNVLVEIS HFRMQQLSGG FDLLPARTDT
TAAALGLTSE AEIQPLSPDE RRLLANLENG IRSEEGGAAL ERALAAKQPQ VIVSSLDLSA
LRAQAENGAE ITSESEGQSF ERPDLDTDYV APSTETEETL AGHFASLLGL SRVGVEDSFF
DLGGHSLIAV RLFAQIKRSF GVEFAMSVLF DAPTVGALAQ RIDKEAGPPA VTVTSTSDTE
TTTPQSYSHL VRLAPGENGE AAPMFIVAGM FGNVLNLRHL AQILGEDRPV YGLQARGLIG
ADEPHERIED AARDYIAEMR LVQPEGPYLI GGFSGGGITA YEIAQQLKAS GDAVDALVLL
DTPLPVRPDL KPIDKTLIKI AEIRAKGPGF VTEWARNRIA WEIRKRQSRP SEGAENAGFN
NRKIELAFLR AVASYTVQPW NGPVTLYRPV LDQHWKVSGG QWVSREREYV YPDNDWKQFA
PALDVCEVPG DHDGMVLAPN VSVLGKKIRD LLAATNSRAT RPHDSSKAAE
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