| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2350 |
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| Symbol | |
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| ID | 4076469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2471775 |
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| End bp | 2472743 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638007672 |
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| Product | type II secretion system protein |
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| Protein accession | YP_614344 |
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| Protein GI | 99082190 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.363474 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTCG GGATTGAACC GCTTATCTAC GGGCTGATCT TCATCGGCGT CCTGGTGCTG
GTCGAAGGCA TCTATCTGGT TGCCTTTGGC AAATCCATCA GCCTCAACAG CCGGGTGAAC
CGTCGCCTCG AGATGCTGGA AAAGGGCGGC AACCGGGAAC AGGTGCTTGA GCAACTCCGC
AAGGAGATGC AGCAGCACCT CAAATCTCAG TCTATCCCAC TCTATTCCCT GCTGGCCGAG
AAGGCGCAGA AGGCGGCCAT CGCCTTTACA CCGATCCAGT TGATCCTCGT CATGTGCGGT
CTCACCGGCG TGGCCTTCAT CGGGCTCAGC GTCGGCACAC AAGCCGCGCT TCCTGTGCGC
GTTCTTGGCT CGGTCATTAT CGGTGTCGGG GCCGTATTCT TCTGGGTAAA TTCCAAAGCC
AAGAAACGCA TGGCCAAAAT CGAAGAGCAG CTCCCCGATG GGGTCGAGCT GATGGTGCGC
TCGCTAAGGG TCGGTCATCC GTTTTCCTCG GCAGTGCAGA TCGTGGCCAA AGAGGTCGAA
GACCCGCTGG CCACCGAATT TGGAATCATC GCCGATGAAT GCGCCTATGG CCGTGACGTG
GGCGAAGCGC TGAAGGAAAT GGCCGAACGT CTGGACATGC AGGATCTGCG CTTCCTCGCG
GTCGCCGTGA CGATCCAACA GCAATCGGGC GGCAACCTCG CCGAAGTGCT TGCAGGGCTT
GCCAAAGTGA TCCGCGCCCG TTTTCGACTG TTTCGCCGCG TAAAGGCGAT CACGGCCGAG
GCGCAGTGGT CGGGCAAATT CCTCTCTGGC TTTCCGCTCT TCGTGCTTGC TGGCACGCTG
GTTTCAGACC CGCATTACTA TGACAACGTG ATCGACCACC CGTGGTTCAT GCCCGCCTGT
TTCATCGTGG GCGGCATGCT GACGGCAAAT ATCTTCGTGA TGCGCAAGCT GACGAACATC
CAGGTCTGA
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| Protein sequence | MEFGIEPLIY GLIFIGVLVL VEGIYLVAFG KSISLNSRVN RRLEMLEKGG NREQVLEQLR
KEMQQHLKSQ SIPLYSLLAE KAQKAAIAFT PIQLILVMCG LTGVAFIGLS VGTQAALPVR
VLGSVIIGVG AVFFWVNSKA KKRMAKIEEQ LPDGVELMVR SLRVGHPFSS AVQIVAKEVE
DPLATEFGII ADECAYGRDV GEALKEMAER LDMQDLRFLA VAVTIQQQSG GNLAEVLAGL
AKVIRARFRL FRRVKAITAE AQWSGKFLSG FPLFVLAGTL VSDPHYYDNV IDHPWFMPAC
FIVGGMLTAN IFVMRKLTNI QV
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