| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2346 |
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| Symbol | |
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| ID | 4076465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2466653 |
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| End bp | 2468146 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638007668 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_614340 |
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| Protein GI | 99082186 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.397877 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACACG AAGTCGCGCA CATTAGCCGC AAAATCGGGG CGCAAAGACC CCACATCAGA
GGCGTGATCG GAAAGGCAGG TCACATGTCA ATTAGACGGT ATTGTGCGGC GGCCCTCACG
GGGCTGGCCC TCCTATTTGC TCATTCTCCC TCGCCCGCAG TGGCGCAGGG GATCAGCGTA
TTGAAAAAGG GCACCAACGC GGTTCTCGAT GTGCCGATGA ACCGGGCCGT GGTGGTCGAA
GCCGATGTGC CCTTTGCGGA ACTCAGCATC GCCAATCCCA GCATTGCGGA TATTTCCTCA
CTGTCGGATC GCACGATCTA TGTGCTGGGC AAATCGCCCG GCCTGACGAC GCTGACGCTG
CTGGACGGCT CTGGCGGGCT GATCACCAAC GTGGATGTGC GCGTCGCTGC GGATGTGAGC
GAGTTCAAAC AGCGCCTGCA GCAGATCCTG CCCAATGAAA AGATCGAAGT GCGCACCGCC
AATGATGGCA TTGTTCTCTC TGGCACCGTT TCCAGTGCCC AACGCCTGCA GCGCGCGCTG
GATCTGGCAG AACGCTATGC TCCGGATCGC GTCAGCAACC TGATGACCGT GGGCGGTATT
CAGCAAGTGA TGCTGAAGGT CCGCTTTGCC GAAATGGAGC GCTCCGTCAG TAAGTCGCTG
GGTGGCTCCA TGCTGATCAG ATCTTCGGAT GGCGCGATTG CCACCGGCTC CTTCCAGAAC
CGTGGCGGCA ACGGAAATAT CTTTGGCGAC AGTGTCACAA GCCCCGTTCA GCTCCAGAGC
GAGACCCTTG GCGCAGCCCT GTTCGGTTTC GACATTGGCG CGGTGCAGTT CAACGTGCTC
CTGGAAGCAC TCGAGCAAAA AGGTCTGGTA CGCACCCTGG CGGAGCCGAA CCTCTCGGCC
CTTTCGGGTC AAGAAGCCAA TTTCCTCGCC GGTGGTGAAT ATCCGGTCCC CGTTGCGCAA
GAAGATGGCG TGATCACGGT TGAGTTCAAA CCCTTCGGGA TTGAGCTGAA CTTCATCCCG
CGCGTGGTTG ATGGCGATCT GATCAATCTG GAGCTCAAGG CTGCAGTCTC GGCGATCGAC
ACCACCAATT CCGCGACCTT TGACGGGTTC TCCATCAACG CCTTCTCGCG CCGCGAAACC
GCAACGACGG TAGAGCTGCG CGATGGTGAG AGCTTTGCGA TTGCCGGTCT CATTGAGGAC
GAGTTCCGCG ACGGGGCCGC ACAGGTGCCT TGGCTTGGCG ATGTGCCGGT TCTGGGCGCC
CTCTTCCGCA GTGCAGATTA CGCCCGCAAC CAGAGCGAAT TGGTTATCAT CGTCTCGGCT
CATCTGGTGA CCCCGACCCG CGGCGAAGCG CTGGCGCTGC CAACAGATCG CATTCGCCCC
CCGAGCGAGA AGAATCTGTT CTTGTTCGGA CAGACCGAAC GCGCACAGGC CGGGGCTGCA
GGCGAAGTTG CAAATCAGGA CTTCAACGGC TCTTATGGCT ATCTACTTGA TTGA
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| Protein sequence | MKHEVAHISR KIGAQRPHIR GVIGKAGHMS IRRYCAAALT GLALLFAHSP SPAVAQGISV
LKKGTNAVLD VPMNRAVVVE ADVPFAELSI ANPSIADISS LSDRTIYVLG KSPGLTTLTL
LDGSGGLITN VDVRVAADVS EFKQRLQQIL PNEKIEVRTA NDGIVLSGTV SSAQRLQRAL
DLAERYAPDR VSNLMTVGGI QQVMLKVRFA EMERSVSKSL GGSMLIRSSD GAIATGSFQN
RGGNGNIFGD SVTSPVQLQS ETLGAALFGF DIGAVQFNVL LEALEQKGLV RTLAEPNLSA
LSGQEANFLA GGEYPVPVAQ EDGVITVEFK PFGIELNFIP RVVDGDLINL ELKAAVSAID
TTNSATFDGF SINAFSRRET ATTVELRDGE SFAIAGLIED EFRDGAAQVP WLGDVPVLGA
LFRSADYARN QSELVIIVSA HLVTPTRGEA LALPTDRIRP PSEKNLFLFG QTERAQAGAA
GEVANQDFNG SYGYLLD
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