| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2339 |
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| Symbol | |
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| ID | 4078329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2459369 |
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| End bp | 2462050 |
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| Gene Length | 2682 bp |
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| Protein Length | 893 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638007661 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_614333 |
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| Protein GI | 99082179 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.786994 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGTTG TCGTTGTCGA ATCCCCGGCC AAAGCCAAAA CAATCAATAA ATATCTGGGC
TCCGACTACA CTGTTTTGGC ATCCTACGGT CACGTCCGGG ACCTGCCCGC AAAGAACGGA
TCCGTTGACC CCGAAGATGA TTTTGCGATG ACATGGGAGG TCGGCAACGA CTCCAAAAAA
CATGTGCGCG CCATCGCAGA GGCGCTCAAG GACGACAACG CATTGATCCT CGCGACCGAC
CCCGACCGCG AAGGCGAGGC GATCAGCTGG CACTTGCAAG AAGCGCTCAC CAAGCGGCGC
TCCATCAAGA AGGACACCGA CGTCAAACGC GTGACCTTCA ACGCGATCAC CAAGGACGCT
GTCGCCGAGG CCATGAAAAA CCCCCGCGAT GTCGATATGC CGCTGGTAGA GGCCTACCTC
GCCCGGCGTG CTCTCGATTA TCTTGTGGGC TTCAACCTCT CTCCGGTGCT TTGGCGCAAA
CTGCCCGGCG CGCGCTCGGC CGGGCGTGTG CAATCGGTTT GCCTCCGCCT CATCGTGGAG
CGCGAGATGG AGATCGAGGC GTTCAACCCG CAGGAATATT GGTCCGTCCG CGCAAACCTT
GCCACCCCGC GCGGCCAATC GTTTGAGGCG CGCCTGACCG TGCTCGGCGG TGAAAAACTC
GACAAATTCA GCCTCGCAAA CTCGACGGCG GCAGAACTGG CGGTGCAGGC CGTCAGCAGC
CGCAAAATGT CTGTCCTGTC GGTTGAGGCC AAACCGGCGG CGCGCAACCC CTCTGCGCCT
TTCATGACCT CGACCCTGCA ACAGGAAGCG AGCCGCAAGT TCGGCATGGG CGCCAAACAG
TGCATGAATG CCGCGCAGCG TCTCTATGAG GCCGGGCTCA TCACCTATAT GCGGACCGAT
GGGATCGACA TGGCCCCGGA GGCGGTCTCT GCCGCGCGCG ATGAGATTGC CAAGCGCTAT
GGCCAGGAAT ATGTGCCCGG CGAGCCGCGG ATCTACAAGA ACAAGGCCAA GAACGCCCAA
GAGGCGCACG AATGTATCCG CCCGACCGAC ATGAGCCGCG ACGCCGCGAG CCTCAAAGTA
TCCGAAGATG ATCAGCGCAA GCTTTATGAC CTGATCTGGA AACGCACGCT CGCCTGCCAG
ATGGCAGGTG CCCGTCTGGA GCGCACCACA GTGGACATCG GCTCTGACGA CAAGCAGGTG
GTGCTGCGCG CCACCGGTCA GGTCGTCATG TTTGATGGCT TCATGCGCGT GTATGAAGAA
GGCCGCGATG ATGTGGTCGA CGAGGACGAC AAGCGTCTGC CGCAGATCAT GCAAGGCGAA
GCACTGAAGT TTGCAGGTTC GCTTGCGGCT CAGGCGGAAA AAGCGGGCAA AGACGGTTCT
GTGCTGTCGC AGGATGGCGC AACGCTGGCA CTGCAGCACC ACACCCAGCC GCCGCCGCGC
TATACCGAGG CCACATTGGT CAAACGGATG GAAGAGCTCG GCATCGGCCG CCCGTCGACC
TACGCCAGCG TCATCACCAC GATCCAGGAC CGCGAATATG TCCGCAAGGA CAAGAACCGC
CTCTTCCCCG AGGACAAAGG GCGGATCGTG ACCATCTTCC TGCTGAACTT CTTTAAGCGC
TACGTGGAAT ATGACTTCAC CGCCGCGCTC GAGAACCAGC TCGATGATGT CAGTGCAGGC
GGCAAGGACT ACAAGGAACT TCTGGACAGT TTCTGGCGCG ACTTCTCGGC GGCGATCTCC
GAGACCTCCG ATCTGCGCAT CTCGGAAGTT CTGGATGTGC TGGACGAGGC GCTTGCGCCA
CAGCTCTACC CCCCGCGAGA AGATGGTGGC GACCCGCGTA TCTGCCCCAA GTGTGGTGCC
GGTCAACTAC ATTTGAAAAC CTCGCGCACC GGCGGTTTCG TGGGTTGCGG CAACTACCCC
GAATGCAACT ATACCCGCCC GATCTCGGGC GAGGGCGCCG AAGGTTATGA ACGCGTCCTC
GGCGAGGATG ACGGCGACGA GATCCACCTG AAGTCCGGCC GCTTTGGCCC CTATGTGCAA
CGCGGTGAGG CCACGCCAGA AAACAAGAAG CCGCCGCGCT CCTCGCTGCC GAAACAGGGC
AAGGACTATC TGCCCGGCTG GGGCCCCAAT GAGATCACGC TCGAGCAAGC CGTGACCTTG
CTGACGCTAC CGCGCGAAAT CGGCGCGCAC CCGGAGGGCG GCGTGGTGTC GTCGAACCTC
GGTCGATTTG GCCCCTACAT CATGCACCAG CGTCCCGACG AGGAAAAACC GGTCTATGTG
AACCTGAAGG AAACGCTGGA CGTCTTTGAA ATCGGCATGA ACCGCGCGGT GGAGATGCTG
GCGGAAAAAC GCGCCAACCC GGGCCGCGGG CGCTCTGCTG CCGCAAAACC GCTGCGTGAG
CTGGGCGAAC ATCCGGACGA CAAGGCGCCC GTGAACATCA TGGATGGGCG CTACGGGCCT
TATGTGAAAT GGGGCAAGGT CAATGCGACT CTGCCCAAGG ACACCGAGGC CAAGGACGTG
ACCATGGAGA TGGCGGTTGA GCTTCTGAAT GAAAAAGCCG CCAAATCCGG CAAGAAAAAA
GCGCCCGCGA AGAAAGCTGC TGCGAAGAAG ACCACAGCCA AGAAAACCAC CGCGAAAAAA
GCACCCGCCA AAAAGAAAGA GGCCAAAGCC TCTGGCGATT AA
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| Protein sequence | MPVVVVESPA KAKTINKYLG SDYTVLASYG HVRDLPAKNG SVDPEDDFAM TWEVGNDSKK
HVRAIAEALK DDNALILATD PDREGEAISW HLQEALTKRR SIKKDTDVKR VTFNAITKDA
VAEAMKNPRD VDMPLVEAYL ARRALDYLVG FNLSPVLWRK LPGARSAGRV QSVCLRLIVE
REMEIEAFNP QEYWSVRANL ATPRGQSFEA RLTVLGGEKL DKFSLANSTA AELAVQAVSS
RKMSVLSVEA KPAARNPSAP FMTSTLQQEA SRKFGMGAKQ CMNAAQRLYE AGLITYMRTD
GIDMAPEAVS AARDEIAKRY GQEYVPGEPR IYKNKAKNAQ EAHECIRPTD MSRDAASLKV
SEDDQRKLYD LIWKRTLACQ MAGARLERTT VDIGSDDKQV VLRATGQVVM FDGFMRVYEE
GRDDVVDEDD KRLPQIMQGE ALKFAGSLAA QAEKAGKDGS VLSQDGATLA LQHHTQPPPR
YTEATLVKRM EELGIGRPST YASVITTIQD REYVRKDKNR LFPEDKGRIV TIFLLNFFKR
YVEYDFTAAL ENQLDDVSAG GKDYKELLDS FWRDFSAAIS ETSDLRISEV LDVLDEALAP
QLYPPREDGG DPRICPKCGA GQLHLKTSRT GGFVGCGNYP ECNYTRPISG EGAEGYERVL
GEDDGDEIHL KSGRFGPYVQ RGEATPENKK PPRSSLPKQG KDYLPGWGPN EITLEQAVTL
LTLPREIGAH PEGGVVSSNL GRFGPYIMHQ RPDEEKPVYV NLKETLDVFE IGMNRAVEML
AEKRANPGRG RSAAAKPLRE LGEHPDDKAP VNIMDGRYGP YVKWGKVNAT LPKDTEAKDV
TMEMAVELLN EKAAKSGKKK APAKKAAAKK TTAKKTTAKK APAKKKEAKA SGD
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